[pdbjlvh2]Protein Model on 5mfg_A_1_B

Protein Model on 5mfg_A_1_B_1 (TEMPLATE: 5mfg )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(IMA1_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [282 aa]	YIIIM5AII
2	b		B 1 (B)	polymer(polypeptide(L)) [269 aa]	YIIIM5AII	325D(N) 328T(I) 329Q 332I 337L 341P(V) 344L 349T(E) 352Q(L) 353K(Q) 356T(L) 357W 359M(L) 360S 361N 362I 363T(A) 364A(S) 365G 370I(K) 372Q(A) 379V(L) 382L 383V(E) 386L(Q) 387S 389A(E) 393T(I) 394Q 396E 399W(E) 400A 403N(K) (identity: 42.4 %/39.9 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:5mfg_A_1 identity=39.9%

queryA       121:IPKFVSFLGRTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSVFRDLVIKYGAVDPLLALLAVPDMSS: 220
                : *  *  *   *    *      *  ****  **  ** * ** **   ** **   *   * *** ***  *      **  **   *  **  *    :
5mfg_A_1       6:LPQMVQQLNSPDQQELQ-SALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ-: 103
SecStr          :HHHHHHHTT S HHHHH-HHHHHHHHHHSS HHHHHHHHHTT HHHHHHGGG S HHHHHHHHHHHHHHHTS HHHHHHHHHHT HHHHHHHTT S HH-:    
ExpBur          :eeebbeebebeeeeebb-ebbeebbeebeeeeeebeebbeeebbebbbebbebeeeebbebbbebbbbbbebeeebbebbbeeebbeebeebbebeeee-:    

queryA       221:LACGYLRNLTWTLSNLCR--NKNPAPPIDAVEQILPTLVRLLHHDDPEVLADTCWAISYLTDGPNERIGMVVKTGVVPQLVKLLGASELPIVTPALRAIG: 318
                :     *    * ***     *      ***    ** ** **       *    ** *    * ** *  *   *  * ** **      *   ** *  :
5mfg_A_1     104:----ILQEALWALSNIASGGNEQIQAVIDAG--ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALS: 197
SecStr          :----HHHHHHHHHHHHTTS HHHHHHHHHTT--HHHHHHHHTT S HHHHHHHHHHHHHHHTS HHHHHHHHHTTHHHHHHHHTT S HHHHHHHHHHHH:    
ExpBur          :----bbebbbebbbbbbebbeebbebbbeee--bbebbeebbebeeeebbebbbebbbbbbebbeebbbbbbeeebbeebeebbebeeeebbebbbebbb:    

queryA       319:NIVTGTDEQTQVVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVSVLSKADFKTQKEAVWAVTNYTS: 406
                :**  *  ** * *******     **  *   *  ** *  ***  *   * * *   *    *    *    * ****  *     *:
5mfg_A_1     198:NIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS: 285
SecStr          :HHTTS HHHHHHHHHTT HHHHHHHTT S HHHHHHHHHHHHHHTTTT GGG   SSTTHHHHHHHHHTTHHHHHHHHHHHHHHHHHT:    
ExpBur          :bbbbbbeebbebbeeeebeebbeebeebeeeebeebbebbeebbebeebebebbebeeebeeeeeeeeeebeeeeeeeeeeeeeeeee:    
Contact         :      b  bb  b    b   b  b    b  bb  bb bbbbbbb    b b      b  bb  bb b   bb b  bb  b

Protein Model on 5mfg_A_1_B_1 (TEMPLATE: 5mfg )

Input Residue Numbers for Focused Sites