Protein Model on 2d9q_B_2_A_1 (TEMPLATE: 2d9q )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]


MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(IL6RB_HUMAN) B 2 (B) polymer(polypeptide(L)) [299 aa] Granulocyte colony-stimulating factor receptor :CSF3R_HUMAN
2 b A 1 (A) polymer(polypeptide(L)) [168 aa] CSF3 :CSF3_HUMAN 28C 100Q(F) 108F(W) 112E(L) 113Q 114N(I) 115V(L) 116Y(D) 117G(Q) (identity: 22.2 %/31.1 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:2d9q_B_2 identity=31.1%
queryA        28:CGYISPESPVVQLHSNFTAVCVLKEKCMDYFHVNAN-YIVWKTNHFTIP--KEQYTIINRTASSVTFTDIASLNIQLTCNILTFGQLEQNVYGITIISGL: 124
                :** **   * * *    ** *  *  *    *      * *       *    *        *  *          * *  *  *   *         * :
2d9q_B_2       2:CGHISVSAPIVHLGDPITASCIIKQNC---SHLDPEPQILWRLGAELQPGGRQQRLSDGTQESIITLPHLNHTQAFLSCS-LNWGNSLQILDQVELRAGY:  97
SecStr          :   EEES SEE TT  EEEEE   TTS--- SS S S  EEESSS B TT EE   SSS   EEEEES   SSEEEEEEE-EESSSSEEEEEEEEEEE  :    
ExpBur          :ebebeeeeeebeeeeebebbbebeeee---eeeebebebebbbeeeeeeeeeeeeeeebebebebebeebeeeebebbbb-beeeeeeeebeeeebebbe:    
Contact         :b                                                                          b       b   bbbbbb       

queryA       125:PPEKPKNLSCIVN-EGKKMRCEWDGGRETHLETNFTLKS-------EWATHKFADCKAKRDTPTSCTVDYS-TVYFVNIEVWVEAENALGKVTSDHINFD: 215
                :**  * ****  *       * *  * **** * *****               **  * *    *           *   ** ******   *     *:
2d9q_B_2      98:PPAIPHNLSCLMNLTTSSLICQWEPGPETHLPTSFTLKSFKSRGNCQTQGDSILDCVPK-DGQSHCSIPRKHLLLYQNMGIWVQAENALGTSMSPQLCLD: 196
SecStr          :     EEEEEEEETTTTEEEEEEE  S  SS  EEEEEEEE  TTS S    EEEE   -TT SEEEEEGGG  SSS EEEEEEEEETTEEEE   EEE :    
ExpBur          :ebeebeebebebebeeebbebebeeeeebebeeeebbbbbebeeebeeeeeeeeebebe-eeeeebebeeeebebeeebbbbbbbebebeebebeeeebb:    

queryA       216:PVYKVKPNPPHNLSV----INSEELSSILKLTWTNPSIKSVIILKYNIQYR-TKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYW: 310
                :*   **  **                  * * *        *  *             *    *              * * * *   ***      * *:
2d9q_B_2     197:PMDVVKLEPPMLRTMDPXXXXXXXQAGCLQLSWEPWQPGLHINQKCELRHKPQRGEASWALVGPLPLEALQ--YELCGLLPATAYTLQIRCIRWPLPGHW: 294
SecStr          :GGGGEE    EEEE   -------  S EEEEEE  GGGTTS EEEEEEEEESSS    EEEEEE S EEE--EEE S  S   EEEEEEEEE SS    :    
ExpBur          :bbebbebebbebeeeee-------eebbbebbbebbeebeebebebbbbbeeeeeeeeeeebeebebebee--bebeebeeeebbbbbbbbbbeeeeeee:    

queryA       311:SDWS: 314
                :****:
2d9q_B_2     295:SDWS: 298
SecStr          :    :    
ExpBur          :beeb:    


Input Residue Numbers for Focused Sites

ex) 2,15,123