Protein Model on 7aoi_NB_1_F_1 (TEMPLATE: 7aoi )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(DDX1_HUMAN) NB 1 (XB) polymer(polypeptide(L)) [614 aa] DEAD-box helicase, putative,mt-LAF2 :D0A9G9_TRYB9
2 b F 1 (AA) polymer(polyribonucleotide) mt-LSU rRNA 35L(V) 38G(Q) 40G(K) 514R 516K(G) 517I 518D 519C 521N(T) 523E(A) 526F(H) 527I(R) 544C(L) 546H 547G(A) 548D(A) 549R(L) 550K(P) 551P(A) 553E(V) 554R 572T 573D 574V 590V(F) 594D(T) (identity: 34.6 %/35.6 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:7aoi_NB_1 identity=35.6%
queryA         1:MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGS: 100
                :   *  *   **   *        *  **      *    *   **  * *** *   *  *                                      :
7aoi_NB_1     52:VTSFEDMPLYPELRSALRQLRITTPSPIQQSAVEVIMQRKDTVVAAPHGEGKTLAYLLPLYQ--------------------------------------: 113
SecStr          :   TTTS   HHHHHHHHHHT  S  HHHHHHHHHHHTT  EEEE SSSS HHHHHHHHHHH--------------------------------------:    
ExpBur          :beebeebebeeebeebbeebebebbbbbbbbbbebbbeeebbbbbbbbbbbbebbbbbbbbb--------------------------------------:    
Contact         :                                  b  b b                                                            

queryA       101:AFAIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDK: 200
                :                                                                                                    :
7aoi_NB_1     -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       201:GHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAE: 300
                :                                                                                                    :
7aoi_NB_1     -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       301:QTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKR: 400
                :                                                                                                    :
7aoi_NB_1     -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       401:LQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRA: 500
                :                                                                                                    :
7aoi_NB_1     -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       501:IKEHKMD---------------------------------------------------------------------------------------------: 507
                :                                                                                                    :
7aoi_NB_1    114:-------NMIKDRDVYKIPLRERRPRMILLAPTRELIAQLHHVCSVLGEATGLHAISFTSRKRANHRLSRLLKQQLVDVMIMDPKIVLRLIRARRVFLDD: 206
SecStr          :-------HHHHHHHTS     SS  SEEEE SSHHHHHHHHHHHHHHHHHHS  EEE    SSHHHHHHHHHHH   SEEE  HHHHHHHHHTTSS SSS:    
ExpBur          :-------bbbebeeeeebeeeebebbbbbbbbbebbbebbeebbeebbeebebebbbbbeeeeeeeebbeebeeeebbbbbbbbebbbebbeeeebebeb:    
Contact         :                               bbb                        bbbbbbbbb bb  b         b bb  bb b bb     

queryA        -1:----------------------------------------------------------------------------------------------------:  -1
                :                                                                                                    :
7aoi_NB_1    207:LRYVAVDEADGMLSSQHDHDAVHLLMKVQKRVMFKHLWPVQTQTVFATAFITRKLEFVVGKKYPDAVTCIRRQRMHRPPGTLRHRFLPVEREREKMDTLQ: 306
SecStr          :  EEEES HHHHHSGGGTTHHHHHHHHHHHHHH  SS     EEEEEESS  HHHHHHHHHH TT EEE  GGGTTS  TTEEEEEEE SSTTHHHHHHH:    
ExpBur          :bbbbbbbbbbbbbbeeeeebbbebbbebbebeeeeeeeebebbbbbbbbbbbbebbebbbeebeebbbbbeeeebbeebeebebebeebeeeeebbeebb:    
Contact         :              bbbbb  bb  b   b                      bb  bb  bb    b     b                 bbb       

queryA        -1:----------------------------------------------------------------------------------------------------:  -1
                :                                                                                                    :
7aoi_NB_1    307:HLLKKHGNRPREILTDIEEEQAYSKPHYLSGSLEELVELXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEMKERVRH: 406
SecStr          :HHHHHHT       SHHHHHHHHHS       HHHHHH ---------------------------------------------------- HHHHHHHH:    
ExpBur          :ebbeebebebeeeeeeebeeebeeeeeeeebeeeebeee----------------------------------------------------eeeebebbb:    

queryA       508:---------------------------------QAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDV: 574
                :                                   *** *  ***     *    * *         *  **       *      *  *    *  ***:
7aoi_NB_1    407:ALEGVRPVHWGHLTTVAAPFTCHVPRTVFADGKRCIIFTR-GIDCAT-AVYHRLRGCG-------YTCSLLHAALPAAVRRRMFADFASGRTNILCSTDV: 497
SecStr          :HHHT   EE SS EE       SS      SS  EEEE S-SHHHHH-HHHHHHHHHT-------   EEE TTS HHHHHHHHHHHHHTS SEEEE GG:    
ExpBur          :eebebeebebeebebebbebbbebebebbbebebbbbbbe-eeebbe-ebbeebbbeb-------bbbbbbbeebeeeebeebbebbbbbebbbbbbbeb:    
Contact         :                                       b bbbb b b  bb                b bbbbbb bb                 bbb

queryA       575:AARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISL: 618
                :**** * * *  * *   *     *  * **  *  * *   **:
7aoi_NB_1    498:AARGLDLH-VDFVVNFDMPTNALTYLSRAGRTARQGRLGQVYSL: 540
SecStr          :GGSS    - SEEEESS  SSHHHHHHHHHTT  SS  EEEEEE:    
ExpBur          :bbebbbbb-bbbbbbbbbbebbbbbbbbbbbbbbebbebbbbbb:    
Contact         :               b   b

Input Residue Numbers for Focused Sites

ex) 2,15,123