Protein Model on 7aoi_NB_1_E_1 (TEMPLATE: 7aoi )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(DDX1_HUMAN) NB 1 (XB) polymer(polypeptide(L)) [614 aa] DEAD-box helicase, putative,mt-LAF2 :D0A9G9_TRYB9
2 b E 1 (A8) polymer(polypeptide(L)) [142 aa] bL33m :A0A3L6L070_9TRYP 517I 548D(A) (identity: 50.0 %/35.6 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:7aoi_NB_1 identity=35.6%
queryA         1:MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGS: 100
                :   *  *   **   *        *  **      *    *   **  * *** *   *  *                                      :
7aoi_NB_1     52:VTSFEDMPLYPELRSALRQLRITTPSPIQQSAVEVIMQRKDTVVAAPHGEGKTLAYLLPLYQ--------------------------------------: 113
SecStr          :   TTTS   HHHHHHHHHHT  S  HHHHHHHHHHHTT  EEEE SSSS HHHHHHHHHHH--------------------------------------:    
ExpBur          :beebeebebeeebeebbeebebebbbbbbbbbbebbbeeebbbbbbbbbbbbebbbbbbbbb--------------------------------------:    

queryA       101:AFAIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDK: 200
                :                                                                                                    :
7aoi_NB_1     -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       201:GHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAE: 300
                :                                                                                                    :
7aoi_NB_1     -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       301:QTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKR: 400
                :                                                                                                    :
7aoi_NB_1     -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       401:LQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRA: 500
                :                                                                                                    :
7aoi_NB_1     -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       501:IKEHKMD---------------------------------------------------------------------------------------------: 507
                :                                                                                                    :
7aoi_NB_1    114:-------NMIKDRDVYKIPLRERRPRMILLAPTRELIAQLHHVCSVLGEATGLHAISFTSRKRANHRLSRLLKQQLVDVMIMDPKIVLRLIRARRVFLDD: 206
SecStr          :-------HHHHHHHTS     SS  SEEEE SSHHHHHHHHHHHHHHHHHHS  EEE    SSHHHHHHHHHHH   SEEE  HHHHHHHHHTTSS SSS:    
ExpBur          :-------bbbebeeeeebeeeebebbbbbbbbbebbbebbeebbeebbeebebebbbbbeeeeeeeebbeebeeeebbbbbbbbebbbebbeeeebebeb:    
Contact         :                                                                                        b           

queryA        -1:----------------------------------------------------------------------------------------------------:  -1
                :                                                                                                    :
7aoi_NB_1    207:LRYVAVDEADGMLSSQHDHDAVHLLMKVQKRVMFKHLWPVQTQTVFATAFITRKLEFVVGKKYPDAVTCIRRQRMHRPPGTLRHRFLPVEREREKMDTLQ: 306
SecStr          :  EEEES HHHHHSGGGTTHHHHHHHHHHHHHH  SS     EEEEEESS  HHHHHHHHHH TT EEE  GGGTTS  TTEEEEEEE SSTTHHHHHHH:    
ExpBur          :bbbbbbbbbbbbbbeeeeebbbebbbebbebeeeeeeeebebbbbbbbbbbbbebbebbbeebeebbbbbeeeebbeebeebebebeebeeeeebbeebb:    
Contact         :              b  b                                                                                  

queryA        -1:----------------------------------------------------------------------------------------------------:  -1
                :                                                                                                    :
7aoi_NB_1    307:HLLKKHGNRPREILTDIEEEQAYSKPHYLSGSLEELVELXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEMKERVRH: 406
SecStr          :HHHHHHT       SHHHHHHHHHS       HHHHHH ---------------------------------------------------- HHHHHHHH:    
ExpBur          :ebbeebebebeeeeeeebeeebeeeeeeeebeeeebeee----------------------------------------------------eeeebebbb:    

queryA       508:---------------------------------QAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDV: 574
                :                                   *** *  ***     *    * *         *  **       *      *  *    *  ***:
7aoi_NB_1    407:ALEGVRPVHWGHLTTVAAPFTCHVPRTVFADGKRCIIFTR-GIDCAT-AVYHRLRGCG-------YTCSLLHAALPAAVRRRMFADFASGRTNILCSTDV: 497
SecStr          :HHHT   EE SS EE       SS      SS  EEEE S-SHHHHH-HHHHHHHHHT-------   EEE TTS HHHHHHHHHHHHHTS SEEEE GG:    
ExpBur          :eebebeebebeebebebbebbbebebebbbebebbbbbbe-eeebbe-ebbeebbbeb-------bbbbbbbeebeeeebeebbebbbbbebbbbbbbeb:    
Contact         :                                          b                              b                          

queryA       575:AARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISL: 618
                :**** * * *  * *   *     *  * **  *  * *   **:
7aoi_NB_1    498:AARGLDLH-VDFVVNFDMPTNALTYLSRAGRTARQGRLGQVYSL: 540
SecStr          :GGSS    - SEEEESS  SSHHHHHHHHHTT  SS  EEEEEE:    
ExpBur          :bbebbbbb-bbbbbbbbbbebbbbbbbbbbbbbbebbebbbbbb:    


Input Residue Numbers for Focused Sites

ex) 2,15,123