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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(DDX1_HUMAN) | Q 1 (EB) | polymer(polypeptide(L)) [627 aa] | DEAD-box helicase, putative :D0A9G9_TRYB9 | |
2 | b | L 1 (AA) | polymer(polyribonucleotide) | 12S ribosomal RNA | 38G(Q) 40G(K) 514R 516K(G) 517I 518D 519C 521N(T) 522L(A) 525Y(H) 526F(R) 546H 547G(A) 548D(A) 549R(L) 550K(P) 551P(A) 553E(V) 554R 555K(R) 572T 573D 574V 590V(F) 594D(T) (identity: 36.0 %/34.4 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:6yxx_Q_1 identity=34.4% |
queryA 1:MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGS: 100 : * * ** * * ** * * ** * *** * * * : 6yxx_Q_1 98:VTSFEDMPLYPELRSALRQLRITTPSPIQQSAVEVIMQRKDTVVAAPHGEGKTLAYLLPLYQ--------------------------------------: 159 SecStr : S TTTS HHHHHHHHHTT S HHHHHHHHHHTT EEEE TTSSHHHHHHHHHHH--------------------------------------: ExpBur :beebeebebeeebeebbeebeeebbbbbbbbbbebbbeeebbbbbbbbbbebebbbbbbbbb--------------------------------------: Contact : b b queryA 101:AFAIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDK: 200 : : 6yxx_Q_1 -1:----------------------------------------------------------------------------------------------------: -1 SecStr :----------------------------------------------------------------------------------------------------: ExpBur :----------------------------------------------------------------------------------------------------: queryA 201:GHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAE: 300 : : 6yxx_Q_1 -1:----------------------------------------------------------------------------------------------------: -1 SecStr :----------------------------------------------------------------------------------------------------: ExpBur :----------------------------------------------------------------------------------------------------: queryA 301:QTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKR: 400 : : 6yxx_Q_1 -1:----------------------------------------------------------------------------------------------------: -1 SecStr :----------------------------------------------------------------------------------------------------: ExpBur :----------------------------------------------------------------------------------------------------: queryA 401:LQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRA: 500 : : 6yxx_Q_1 -1:----------------------------------------------------------------------------------------------------: -1 SecStr :----------------------------------------------------------------------------------------------------: ExpBur :----------------------------------------------------------------------------------------------------: queryA 501:IKEHKMD---------------------------------------------------------------------------------------------: 507 : : 6yxx_Q_1 160:-------NMIKDRDVYKIPLRERRPRMILLAPTRELIAQLHHVCSVLGEATGLHAISFTSRKRANHRLSRLLKQQLVDVMIMDPKIVLRLIRARRVFLDD: 252 SecStr :-------HHHHHHHTS SS SEEEE SSHHHHHHHHHHHHHHHHHH EEE TTHHHHHHHHHHHS SEEEE HHHHHHHHHTTSS TT: ExpBur :-------bbbebeeeeebeeeebbbbbbbbbbbebbbebbeebbebbbeebebebbbbbeeeebeeebbeebeeeebbbbbbebebbbebbeeeebebbb: Contact : bbb b bbbbbbbb bb b b bb b b bb queryA -1:----------------------------------------------------------------------------------------------------: -1 : : 6yxx_Q_1 253:LRYVAVDEADGMLSSQHDHDAVHLLMKVQKRVMFKHLWPVQTQTVFATAFITRKLEFVVGKKYPDAVTCIRRQRMHRPPGTLRHRFLPVEREREKMDTLQ: 352 SecStr : EEEEETHHHHSSGGGTTHHHHHHHHHHHHHH SS EEEEEESS HHHHHHHHTT SS EEE TTTTTS SSEEEEEEE SSGGGHHHHHH: ExpBur :bbbbbbbbbbbbbbeeeeebbbebbeebeebeeeeeeeebebbbbbbbbbbbbebbebbbeebeebbbbbeeeebbebeeebeeebeebeeeeebeebbe: Contact : bbbbb bb b b bb bb bb b bb bbbb b queryA -1:----------------------------------------------------------------------------------------------------: -1 : : 6yxx_Q_1 353:HLLKKHGNRPREILTDIEEEQAYSKPHYLSGSLEELVELRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDNADEMKERVRH: 452 SecStr :HHHHHTT SHHHHHHHHHS HHHHHHHH ----------------------------------------------- HHHHHHHHHHH: ExpBur :ebbeebebebeeeeeeeeeeebeeeeeeeeebeeebeeeee-----------------------------------------------eeeeeeebeebe: Contact :b b b queryA 508:---------------------------------QAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDV: 574 : *** * *** * * ** * * * * ***: 6yxx_Q_1 453:ALEGVRPVHWEHLTTVAAPFTCHVPRTVFADGKRCIIFTR-GIDCATAVYHRLRGCG--------YTCSLLHAALPAAVRRRMFADFASGRTNILCSTDV: 543 SecStr :HHHTB EEETTEEE SS SS EEEE S-HHHHHHHHHHHHHHHT-------- EEE SSS HHHHHHHHHHHHHTS SEEEE TT: ExpBur :eebbbeebebeebebebeebebebebebbbebebbbbbbe-eeeebeebbeebbeeb--------bbbbbbbeebeeeebeebbebbbbbebbbbbbbeb: Contact : b bbbb bb bb bbbbbb bbb bbb queryA 575:AARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISL: 618 :**** * * * * * * * * ** * * * **: 6yxx_Q_1 544:AARGLDLH-VDFVVNFDMPTNALTYLSRAGRTARQGRLGQVYSL: 586 SecStr :TTSS - SEEEESS SSHHHHHHHHHHH TTB EEEEEE: ExpBur :bbbbbbbb-bbbbbbbbbbebbbbbbbbbbbbbbeebebbbbbb: Contact : b b |