Protein Model on 6uv4_A_1_B_1 (TEMPLATE: 6uv4 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(DDX1_HUMAN) A 1 (A) polymer(polypeptide(L)) [426 aa] Probable ATP-dependent RNA helicase DDX17 :DDX17_HUMAN
2 b B 1 (C) polymer(polyribonucleotide) 18a_oligo1 294P 295S(T) 296R 324I(Y) 325G 326G 329A(K) 346T 347P 348G 349R 352D 374G(R) 380Y(F) 383F(Q) 514R(E) 515T 516K 546H 547G 554R 572T 573D 574V 594D(N) (identity: 68.0 %/38.0 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:6uv4_A_1 identity=38.0%
queryA        25:PTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCRA: 124
                :** **    ** * * *    * ****** *   * *                                                               :
6uv4_A_1      86:PTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAI---------------------------------------------------------------: 122
SecStr          :  HHHHHHHHHHHTT  EEEE  TTSSHHHHHHHHHH---------------------------------------------------------------:    
ExpBur          :beebbbbbbbbbbbbebbbbbbbbbbebebbbbbbbb---------------------------------------------------------------:    

queryA       125:TKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKN: 224
                :                                                                                                    :
6uv4_A_1      -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       225:QALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLP------------NAPKALIVEPSRELAEQTLNNIKQFKKY: 312
                :                                                                          *  *   * **** *         * :
6uv4_A_1     123:------------------------------------------------------------VHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKC: 162
SecStr          :------------------------------------------------------------HHHHTS    TT   SEEEE SSHHHHHHHHHHHHHHTTT:    
ExpBur          :------------------------------------------------------------bbbeebeebeeeebbbbbbbbbbebbbbbbbeebeebbee:    
Contact         :                                                                                 bbb                

queryA       313:IDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHS: 412
                :     *    * **     *   ** ** *   ***** *    ** **     *******  *  *    *     **          *    ***   :
6uv4_A_1     163:---SRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQI------RPDRQTLMWSATWPK: 253
SecStr          :---S   EEEE TTS HHHHHHHHHH  SEEEE HHHHHHHHHTTS   TT  EEEEETHHHHTSTTTHHHHHHHHTTS------ TTSEEEEEES   H:    
ExpBur          :---bebebbbbbbebeeeebbeebeebbbbbbbbbebbbebbeeeebbbebbbbbbbbbbbebbeeebbeebeebbeeb------eeebbbbbbbbbbbe:    
Contact         :           bbb  b                bbbb  b                     b     b  b                             

queryA       413:FDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIF: 512
                :  *  * *      *               *         *   *   * *                          *         * ** *    ***:
6uv4_A_1     254:-EVRQLAEDFLRDYTQINV---GNLELSANHNILQI---VDVCMES-EKDH--------------------------KLIQLMEEIMAEKENK---TIIF: 316
SecStr          :-HHHHHHGGG SS EEEEE---S SSS   TTEEEE---EEE  GG-GHHH--------------------------HHHHHHHHHTTSS   ---EEEE:    
ExpBur          :-ebeeebeebbeeebbbbb---beeeebbbeebebe---bbbbeee-ebee--------------------------ebbebbeebbeeeebb---bbbb:    

queryA       513:CRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERM: 612
                :  **  ** *       *             * ***    **   *  *  *    ** **** ** *   *  ***   *     *******  *    :
6uv4_A_1     317:VETKRRCDDLTRRMRRDG---------WPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNK: 407
SecStr          : SSHHHHHHHHHHHHHTT---------  EEEE TTS HHHHHHHHHHHHHTSS EEEE GGGTSS   TT  EEEESS  SSHHHHHHHHTTSS SS  :    
ExpBur          :beeeeebeebbeebeeee---------bebbbbbeeeebeebbebbebbeeeebbbbbbbbbbbbbbebeebebbbbbbbbeebbbbbbbbbbbbbeeee:    
Contact         : bbb                             bb      b                 bbb                   b                  

queryA       613:GLAISL: 618
                :* *   :
6uv4_A_1     408:GTAYTF: 413
SecStr          :EEEEEE:    
ExpBur          :bebebb:    


Input Residue Numbers for Focused Sites

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