Protein Model on 6qdv_D_1_F_1 (TEMPLATE: 6qdv )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(DDX1_HUMAN) D 1 (7) polymer(polypeptide(L)) [390 aa] Eukaryotic initiation factor 4A-III :IF4A3_HUMAN
2 b F 1 (9) polymer(polypeptide(L)) [144 aa] Protein mago nashi homolog 2 :MGN2_HUMAN 26T(S) 27D(A) 31E(R) 47E(Q) 412S(P) 413F(H) 414D(E) 417K(E) 432K 433G(R) 434E(D) 435D(E) 437V(T) 439D(E) 445V(F) 595E(N) 596K(R) 597Q(E) 609A(Y) 610E(G) 624E(I) 625K(R) 628Y(R) 629H(D) 637G(Q) 638C(Y) 640N(S) 641T 642R(Q) 644K(D) 645E (identity: 9.7 %/34.4 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:6qdv_D_1 identity=34.4%
queryA         3:AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAF: 102
                : *  **                *  **   *  *  * **      * ***  *** * *                                        :
6qdv_D_1      18:TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQ----------------------------------------:  77
SecStr          :SGGGS   HHHHHHHHHHT  S  HHHHHHHHHHHHT  EEEE  TTSSHHHHHHHHHHH----------------------------------------:    
ExpBur          :ebeebebeeebbebbeeeeeeebbebbbebbebbeeeebbbbbbebbbebebbbbbbbbb----------------------------------------:    
Contact         :                       bb   b               b                                                       

queryA       103:AIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGH: 202
                :                                                                                                    :
6qdv_D_1      -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       203:VKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP---------KALIVE: 293
                :                                                                                               ***  :
6qdv_D_1      78:-------------------------------------------------------------------------------------CLDIQVRETQALILA:  92
SecStr          :-------------------------------------------------------------------------------------T  TTS S  EEEE :    
ExpBur          :-------------------------------------------------------------------------------------ebebeeeebbbbbbb:    

queryA       294:PSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQ: 393
                :* **** *          *           ***         *  *   * *****  *      *       *******  *  *    *       * :
6qdv_D_1      93:PTRELAVQIQKGLLALGDYMN---VQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPP: 189
SecStr          :SSHHHHHHHHHHHHHHTTTTT---  EEEE TTS HHHHHHHHHH  SEEEE HHHHHHHHHTTSS  TT  EEEEETHHHHTSTTTHHHHHHHHTTS T:    
ExpBur          :bbebbbebbbebbeebbeebe---bebbbbbbeeeeeebeeebeebbbbbbbbbebbeebbeeebbebeebebbbbbbbbebbeeebeeebeebeeebee:    

queryA       394:VTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILK: 493
                : *      **   ****          * *  *     *             * *        **                        * *      * :
6qdv_D_1     190:AT------QVVLISATL-PHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAV--------ER------------------------EEWK--FDTLC: 248
SecStr          :T ------EEEEEES  - HHHHHHGGGT SS EEE   GGG S TTEEEEEEEE--------SS------------------------THHH--HHHHH:    
ExpBur          :eb------bbbbbbbbb-beebbebbeebbeebbebbbeeeebbbeebebbbbeb--------ee------------------------eeeb--bebbb:    
Contact         :                  bbb  b              bbbb b b     b                                                

queryA       494:GEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLP: 593
                :  *    *      ** *** **   * *                 *     ***    **      *  *  * ** *** *** *   *   **  **:
6qdv_D_1     249:DLYDTLTIT-----QAVIFCNTKRKVDWLTEKM---------REANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLP: 334
SecStr          :HHHGGGTTS-----EEEEE S HHHHHHHHHHH---------HTTT   EEE TTS HHHHHHHHHHHHHTS  EEEE GGGTSS   TTEEEEEESS  :    
ExpBur          :ebbeebeeb-----bbbbbbeeeebbeebbebb---------eeeebebbbbbeebebeebeebbeebeeeebebbbbbebbbbbbebeebebbbbbbbb:    

queryA       594:DEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE: 645
                :     * ***** **  * * **  *                   * *   *:
6qdv_D_1     335:NNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDI-----EQYYSTQIDE: 381
SecStr          :SSHHHHHHHHTTSSGGG  EEEEEEEEGGGHHHHHHH-----HHHHT  EEE:    
ExpBur          :eeebbbbbbbbbbbbeeeebebbbbbeeeeeeebeeb-----beebebebee:    
Contact         : bbb           bb             bb  bb       bb bbb bb                                                


Input Residue Numbers for Focused Sites

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