Protein Model on 6o5f_B_1_D_1 (TEMPLATE: 6o5f )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(DDX1_HUMAN) B 1 (B) polymer(polypeptide(L)) [417 aa] ATP-dependent RNA helicase DDX3X :DDX3X_HUMAN
2 b D 1 (D) polymer(polyribonucleotide) RNA (5'-R(P*CP*AP*AP*GP*GP*UP*CP*AP*UP*UP*CP*GP*CP*AP*AP*GP*AP*GP*UP*GP*GP*CP*C)-3') 3A(S) 5S 23L(T) 24L(R) 514R(E) 515T 516K 546H 547G 554R 572T 573D(A) 574V (identity: 61.5 %/33.3 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:6o5f_B_1 identity=33.3%
queryA         1:MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGS: 100
                :   **       *    *      **  *   ** *    *    * ****** **  *     *                                   :
6o5f_B_1      48:IESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIY-----------------------------------: 112
SecStr          : SSGGGS  HHHHHHHHHHHT  S  HHHHHHHHHHHTT  EEEE  TTS HHHHHHHHHHHHHH-----------------------------------:    
ExpBur          :beebeebebeebbeebbeebeeeebebbbbbbbbbbeeebbbbbbbeeebebbbbbbbbbbbebb-----------------------------------:    
Contact         :  b b                 bb                                                                            

queryA       101:AFAIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDK: 200
                :                                                                                                    :
6o5f_B_1      -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       201:GHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNA--------------: 286
                :                                                                                                    :
6o5f_B_1     113:--------------------------------------------------------------------------------------SDGPGEALRAMXXX: 126
SecStr          :--------------------------------------------------------------------------------------HH SHHHHHT ---:    
ExpBur          :--------------------------------------------------------------------------------------eebbeeeeeee---:    

queryA       287:---------PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLS: 377
                :         *  *   * **** *       *         *     **     *   ** *    * ***** *    **  *     *******  * :
6o5f_B_1     127:XXXXXXKQYPISLVLAPTRELAVQIYEEARKFSY---RSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLD: 223
SecStr          :------ B  SEEEE SSHHHHHHHHHHHHHHST---TSS  EEEE TTS HHHHHHHHTT  SEEEE HHHHHHHHHTTSB  TT  EEEESSHHHHHH:    
ExpBur          :------eebbbbbbbbbeeebbbebbebbebbbb---ebebebbbbbeeeebeebbebbeebbebbbbbbebbbebbeeeebbbeebebbbbbbbbebbe:    

queryA       378:QGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRP: 477
                : *    * *   *       * *      ***               **        *         *                                :
6o5f_B_1     224:MGFEPQIRRIVEQ-DTMPPKGVR-HTMMFSAT---------------FPKEIQMLARDFLDEYIFLAVXXXXXXXENITQKV------------------: 288
SecStr          :TT HHHHHHHHTS-SS   BTTB-EEEEEES ---------------  HHHHHHHHHH SS EEEE -------  EEEEE------------------:    
ExpBur          :eebeeebbebbee-eebbeeeeb-bbbbbbee---------------eeeebeebbeebbeebbebee-------eebebeb------------------:    

queryA       478:GANSPEMWSEAIKILKGEYAVRAIKEHKMDQ-AIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAA: 576
                :       * *     *             *     *  **   * **      *           *   ****    *   *  *  *    *  * ***:
6o5f_B_1     289:------VWVEESD--KRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEG---------YACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAA: 371
SecStr          :------EE  GGG--HHHHHHHHHTT  TT  EEEE SSHHHHHHHHHHHHHTT---------  EEEE TTS HHHHHHHHHHHHTSSS EEEESGGG :    
ExpBur          :------eebeeee--beeebbebbeeeeeebbbbbbbeeeeebeebeebbeeee---------bebbbbbeeeeeeeeeebeeebeebebebbbbbeeeb:    
Contact         :                                     bbb                             bb      b                 bbb  

queryA       577:RGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISL: 618
                :*      *  ***  **     ******* **    *** * :
6o5f_B_1     372:RXXXXSNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSF: 413
SecStr          : ----  BSEEEESS  SSHHHHHHHHTTBS TT  EEEEEE:    
ExpBur          :e----eebebbbbbbbbeebebbbbbbeebbeeeeebebbbb:    


Input Residue Numbers for Focused Sites

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