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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(DDX1_HUMAN) | B 1 (B) | polymer(polypeptide(L)) [383 aa] | ATP-dependent RNA helicase SUB2 :SUB2_YEAST | |
2 | b | I 1 (F) | polymer(polyribonucleotide) | RNA (5'-R(P*UP*UP*UP*UP*UP*U)-3') | 294P(N) 295S(A) 296R 324I(Y) 325G 326G 327V(T) 346T 347P 348G 349R 352D(A) 374G(K) 378Q(E) 514R(K) 515T(S) 516K(T) 546H 547G 554R 572T 573D 574V (identity: 56.5 %/31.8 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:5sup_B_1 identity=31.8% |
queryA 4:FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA: 103 :* ** * * * ** * *** * * *** * * : 5sup_B_1 8:FKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQ-----------------------------------------: 66 SecStr :GGGG HHHHHHHHHTT S HHHHHHHHHHHTT EEEE TTSSSHHHHHHHHHH-----------------------------------------: ExpBur :beebebeeebeebbeebeeeebbebbeebbeebeeeebbbbbbebbeebebbbbbbbbb-----------------------------------------: queryA 104:IGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHV: 203 : : 5sup_B_1 -1:----------------------------------------------------------------------------------------------------: -1 SecStr :----------------------------------------------------------------------------------------------------: ExpBur :----------------------------------------------------------------------------------------------------: queryA 204:KFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKF----LPNAPKALIVEPSRELA: 299 : * ****: 5sup_B_1 67:-------------------------------------------------------------------------------QLDPVPGEVAVVVICNARELA: 87 SecStr :-------------------------------------------------------------------------------H TT EEEE SSHHHH: ExpBur :-------------------------------------------------------------------------------ebeeeeeebbbbbbbbbebbb: Contact : bbb queryA 300:EQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN---GVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTS: 396 : * * * ** * ** * * *** ***** ** ** * * ** * * * * * : 5sup_B_1 88:YQIRNEYLRFSKYM--PDVKTAVFYGGTPISKDAELLKNKDTAPHIVVATPGRLKALVREKYIDLSHVKNFVIDECDKVLEELD---MRRDVQEIFRATP: 182 SecStr :HHHHHHHHHHTTT --TT EEEE TTS HHHHHHHHH TTT SEEEE HHHHHHHHHTTSS TT EEEEETHHHHHHSHH---HHHHHHHHHTTS : ExpBur :bbbeeebeebbeeb--eebebbbbbbeeeeeebbeebeeeeebbbbbbbbbebbbebbeeeebebeebebbbbbbbbebbeeee---beebbeebbeebe: Contact : bbbb bbbb b b b queryA 397:DGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEY: 496 : * ** **** * * * * * * * * * : 5sup_B_1 183:RDK--QVMMFSATL-SQEIRPICRRFLQNP--LEIFVDDEAKLTLHG---------------LQQYYIKLEE---REKNRKLA-----------------: 242 SecStr :SSS--EEEEEES - TTTHHHHHTT SS --EEE SGGGGS TT---------------EEEEEEE G---GGHHHHHH-----------------: ExpBur :eeb--bbbbbbbbb-eeebbebbeebbeee--eeeebeeebebbbeb---------------bebbebebee---eebeeebe-----------------: queryA 497:AVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEK: 596 : * *** * * ** * ** ** * *** ***** ** * * : 5sup_B_1 243:--QLLDDLEFNQVIIFVKSTTRANELTKLL---------NASNFPAITVHGHMKQEERIARYKAFKDFEKRICVSTDVFGRGIDIERINLAINYDLTNEA: 331 SecStr :--HHHHHS SEEEEE SSHHHHHHHHHHH---------HHTT EEEE SSS HHHHHHHHHHHHTTS SEEEE GGGSSS TTEEEEEESS S H: ExpBur :--ebbeebebebbbbbbeeeeebeebbeeb---------eeeebebbbbbeebebeebbeebebbeeeeeebbbbbebbbbbbebeebbbbbbbbbbeeb: Contact : bbb bb b bbb queryA 597:QNYVHRIGRVGRAERMGLAISLVATEKEK: 625 : * ** ** ** ***** * : 5sup_B_1 332:DQYLHRVGRAGRFGTKGLAISFVSSKEDE: 360 SecStr :HHHHHHHTTSSTTT EEEEEEE SHHHH: ExpBur :bbbbbbbbbbbbeeeebbbbbbbeeeebe: |