Protein Model on 5sup_B_1_I_1 (TEMPLATE: 5sup )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:2]

Window size :
[small] [medium] [large]

[help]


MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(DDX1_HUMAN) B 1 (B) polymer(polypeptide(L)) [383 aa] ATP-dependent RNA helicase SUB2 :SUB2_YEAST
2 b I 1 (F) polymer(polyribonucleotide) RNA (5'-R(P*UP*UP*UP*UP*UP*U)-3') 294P(N) 295S(A) 296R 324I(Y) 325G 326G 327V(T) 346T 347P 348G 349R 352D(A) 374G(K) 378Q(E) 514R(K) 515T(S) 516K(T) 546H 547G 554R 572T 573D 574V (identity: 56.5 %/31.8 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:5sup_B_1 identity=31.8%
queryA         4:FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA: 103
                :*      **   *        *   *   **    * ***  *  * ***  *     *                                         :
5sup_B_1       8:FKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQ-----------------------------------------:  66
SecStr          :GGGG   HHHHHHHHHTT  S  HHHHHHHHHHHTT  EEEE  TTSSSHHHHHHHHHH-----------------------------------------:    
ExpBur          :beebebeeebeebbeebeeeebbebbeebbeebeeeebbbbbbebbeebebbbbbbbbb-----------------------------------------:    

queryA       104:IGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHV: 203
                :                                                                                                    :
5sup_B_1      -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       204:KFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKF----LPNAPKALIVEPSRELA: 299
                :                                                                                    *           ****:
5sup_B_1      67:-------------------------------------------------------------------------------QLDPVPGEVAVVVICNARELA:  87
SecStr          :-------------------------------------------------------------------------------H    TT   EEEE SSHHHH:    
ExpBur          :-------------------------------------------------------------------------------ebeeeeeebbbbbbbbbebbb:    
Contact         :                                                                                              bbb   

queryA       300:EQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN---GVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTS: 396
                : *  *    * **   *        **         * *      *** *****  **      ** *   * ** *  *         *    *   * :
5sup_B_1      88:YQIRNEYLRFSKYM--PDVKTAVFYGGTPISKDAELLKNKDTAPHIVVATPGRLKALVREKYIDLSHVKNFVIDECDKVLEELD---MRRDVQEIFRATP: 182
SecStr          :HHHHHHHHHHTTT --TT  EEEE TTS HHHHHHHHH TTT  SEEEE HHHHHHHHHTTSS  TT  EEEEETHHHHHHSHH---HHHHHHHHHTTS :    
ExpBur          :bbbeeebeebbeeb--eebebbbbbbeeeeeebbeebeeeeebbbbbbbbbebbbebbeeeebebeebebbbbbbbbebbeeee---beebbeebbeebe:    
Contact         :                        bbbb                     bbbb  b                     b   b                  

queryA       397:DGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEY: 496
                :  *  **   **** *             *        *    * *                *    *           *  *                 :
5sup_B_1     183:RDK--QVMMFSATL-SQEIRPICRRFLQNP--LEIFVDDEAKLTLHG---------------LQQYYIKLEE---REKNRKLA-----------------: 242
SecStr          :SSS--EEEEEES  - TTTHHHHHTT SS --EEE   SGGGGS TT---------------EEEEEEE  G---GGHHHHHH-----------------:    
ExpBur          :eeb--bbbbbbbbb-eeebbebbeebbeee--eeeebeeebebbbeb---------------bebbebebee---eebeeebe-----------------:    

queryA       497:AVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEK: 596
                :           * ***         *                 *     **  *  **      **    *    ***  *****      **  *  * :
5sup_B_1     243:--QLLDDLEFNQVIIFVKSTTRANELTKLL---------NASNFPAITVHGHMKQEERIARYKAFKDFEKRICVSTDVFGRGIDIERINLAINYDLTNEA: 331
SecStr          :--HHHHHS  SEEEEE SSHHHHHHHHHHH---------HHTT  EEEE SSS HHHHHHHHHHHHTTS SEEEE GGGSSS   TTEEEEEESS  S H:    
ExpBur          :--ebbeebebebbbbbbeeeeebeebbeeb---------eeeebebbbbbeebebeebbeebebbeeeeeebbbbbebbbbbbebeebbbbbbbbbbeeb:    
Contact         :                 bbb                             bb      b                 bbb                      

queryA       597:QNYVHRIGRVGRAERMGLAISLVATEKEK: 625
                :  * ** ** **    ***** *      :
5sup_B_1     332:DQYLHRVGRAGRFGTKGLAISFVSSKEDE: 360
SecStr          :HHHHHHHTTSSTTT  EEEEEEE SHHHH:    
ExpBur          :bbbbbbbbbbbbeeeebbbbbbbeeeebe:    


Input Residue Numbers for Focused Sites

ex) 2,15,123