[pdbjlvh2]Protein Model on 5dtu_A_1_C

Protein Model on 5dtu_A_1_C_1 (TEMPLATE: 5dtu )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(DDX1_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [404 aa]	Prp28 :G0SBQ7_CHATD
2	b		C 1 (A)	non-polymer(MG)	MAGNESIUM ION	50S 51G 52K 53T (identity: 100.0 %/29.7 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:5dtu_A_1 identity=29.7%

queryA         1:MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGS: 100
                :*    * *        *       ** **   **  *   *    * ****** **  *      *                                  :
5dtu_A_1      41:MRNWEESGLPRRLLDIVYRVGYDEPTPIQRAAIPIALQARDLIGVAVTGSGKTAAFLLPLLVYISE----------------------------------: 106
SecStr          : S GGGSSS HHHHHHHHHTT  S  HHHHHHHHHHSSS   EEE  TTSSHHHHHHHHHHHHH  ----------------------------------:    
ExpBur          :beebeebebeeebbebbeeeeeeebeebbbbbbbbbeeebbbbbbbeeebebebbbbbbbbeebee----------------------------------:    
Contact         :                                                 bbbb                                               

queryA       101:AFAIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDK: 200
                :                                                                                                    :
5dtu_A_1      -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       201:GHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLP----------NAPKAL: 290
                :                                                                                                * **:
5dtu_A_1     107:------------------------------------------------------------------------------------XXXXXEYNKNDGPYAL: 122
SecStr          :-----------------------------------------------------------------------------------------  SS  S SEE:    
ExpBur          :-----------------------------------------------------------------------------------------eeeeeebbebb:    

queryA       291:IVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQ: 390
                :*  * ***  *         *  *        * **     *   * **  * * ***** *      *  **      ****    **           :
5dtu_A_1     123:ILAPTRELVQQIES---EARKFADPLGFTVVSIVGGHSLEEQAFALRNGAEIIVATPGRLVDCIERRLLVFSQCCYVIMDEADRMIDQGFEEPLTKILDA: 219
SecStr          :EE SSHHHHHHHHH---HHHHHHGGGT  EEEE SSS HHHHTT TT   SEEEE HHHHTTTTTTTSS  SS  EEEEETHHHHHTTT HHHHHH    :    
ExpBur          :bbbbeeebbeebee---ebeebbeebebebbbbbbeeeeeeeeeeeebbbbbbbbbbeebbebbeeeeeebeebebebbbbbbebbeeebeebbeebeee:    

queryA       391:IPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIK: 490
                :                                *              * **               *   *   *        *        *       :
5dtu_A_1     220:LXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQTMMYTA--------TMPPTV---------------EKIAKKYLRRPAIVTIGNXXXXXXTVE---QRVE: 293
SecStr          : ---------------------------- EEEEEES--------   HHH---------------HHHHHTT SS  EEEE  ------   ---B  E:    
ExpBur          :e----------------------------ebbbbbbe--------eeeeeb---------------eebbeeebeeebbbbbee------eeb---ebbb:    

queryA       491:ILKGEYAVRAIKEHKMDQA------IIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV: 584
                :   **                    * *   *  *              * *   ** * ***      *   *     *    *  ** * ****   *:
5dtu_A_1     294:FIAGEDKRKRRLQEILNSGQFKPPIIVFVNIKRNCEMVAK---------DIKSWGFSTVTLHGSKTQEQREASLAALRNGQAHILVATDLAGRGIDVPDV: 384
SecStr          :EE  SSSHHHHHHHHHHHT S S EEEE S HHHHHHHHH---------HHHHTT  EEE  TTS HHHHHHHHHHHHTTS  EEEE TTTTSS   TT :    
ExpBur          :eeeeeeebeeebeebbeeeebeebbbbbbeeeebbeebbe---------ebeeeeeebbebeeeeeeeebeebbeebeeeebebbbbbeebbeebebeeb:    

queryA       585:PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHV: 630
                :  * *   *     * ***** ***   * **     *   * *  :
5dtu_A_1     385:SLVVNFNMPSTIEAYTHRIGRTGRAGKSGVAITFLGNEDADVMYDL: 430
SecStr          :SEEEESS  SSHHHHHHHHTSS SSS   EEEEEE GGGHHHHHHH:    
ExpBur          :bbbbbbbbbeebebbeebbebbeeeebebbbbbbbbeebeebbeeb:

Protein Model on 5dtu_A_1_C_1 (TEMPLATE: 5dtu )

Input Residue Numbers for Focused Sites