Protein Model on 4w7s_A_1_G_1 (TEMPLATE: 4w7s )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(DDX1_HUMAN) A 1 (A) polymer(polypeptide(L)) [455 aa] Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 :PRP28_YEAST
2 b G 1 (A) non-polymer(P6G) HEXAETHYLENE GLYCOL 382D 383F(Q) 386R(N) (identity: 33.3 %/32.0 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:4w7s_A_1 identity=32.0%
queryA         4:FSEMGVMPE--IAQAVEEMDWLLPTDIQAESIPLILGGG---DVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDR:  98
                :  *    *         *     ** **   **         * *  * ****** ** **                                       :
4w7s_A_1      49:WEELNIIPRDLLRVIIQELRFPSPTPIQRITIPNVCNUKQYRDFLGVASTGSGKTLAFVIPIL-------------------------------------: 111
SecStr          :SSTT  S HHHHHHHHHTT  SS  HHHHHHHHHHS TT    EEEE  TTSSHHHHHHHHHH-------------------------------------:    
ExpBur          :beeeebbeeebbebbeeebeeeebeebbbbbbbbbbbeeeebbbbbbbeeeeebbbbbbbbbb-------------------------------------:    

queryA        99:GSAFAIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDI: 198
                :                                                                                                    :
4w7s_A_1      -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       199:DKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLP--------------: 284
                :                                                                                                    :
4w7s_A_1     112:--------------------------------------------------------------------------------------IKUSRSPPRPPSLK: 125
SecStr          :--------------------------------------------------------------------------------------HHHHTS    HHHH:    
ExpBur          :--------------------------------------------------------------------------------------bbeeeeeebeeeeb:    

queryA       285:--NAPKALIVEPSRELAEQTLNNIKQFKKYID---NPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQG: 379
                :    *****  * ***  *         *      *       * **         *  * ** * ***** *      *   **  *******     *:
4w7s_A_1     126:IIDGPKALILAPTRELVQQIQKETQKVTKIWSKESNYDCKVISIVGGHSLEEISFSLSEGCDILVATPGRLIDSLENHLLVUKQVETLVLDEADKUIDLG: 225
SecStr          :HHH  SEEEE SSHHHHHHHHHHHHHHHHHHHHSSS    EEEE TT  HHHHHHHHTT  SEEEE HHHHHHHHHTT  -     EEEETTHHHHHHTT:    
ExpBur          :eebbbbbbbbbbeeebbeebbeebeebbeebeeeeebebbbbbbbeebeeeebeeebeebbbbbbbbbebbbebbeeeee-bebbebbbbbbbbebeeee:    

queryA       380:YSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGA: 479
                :  *                   *     **       *        *       *         **       *                          :
4w7s_A_1     226:FEDQVTNILTKVDINADSAVNRQTLUFTATUTPV-IEKIAAGYUQKPVYATIGVETGSEPLIQQVVEYADNDEDKF------------------------: 300
SecStr          : HHHHHHHHHHHHHH  TT   EEEEEESS  HH-HHHHHHHH SS B - BSS      EEEEEEEE SSHHHHH------------------------:    
ExpBur          :eeeebeebbeebeeeeeeebebbbbbbbebeeee-beebbeeebeebbe-ebeeeeeeeeebebbbebbeeeeebb------------------------:    
Contact         :  bb  b                                                                                             

queryA       480:NSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGI: 579
                :          *     *             ***   *   * *   *         *        ***      *   *  *    *   * * ***** :
4w7s_A_1     301:-------KKLKPIVAKYD---------PPIIIFINYKQTADWLAEKF--------QKETNUKVTILHGSKSQEQREHSLQLFRTNKVQIUIATNVAARGL: 376
SecStr          :-------HHHHHHHTTS ---------S EEEE SSHHHHHHHHHHH--------HHH S  EEEE S S HHHHHHHHHHHHTTSSSEEEE TTTTTTS:    
ExpBur          :-------eebeebbeeee---------eebbbbbeeeebbeebbebb--------eeeeebebbbbeeeeeeeebeebbebbeeeebbbbbbbeebbeee:    

queryA       580:DIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK: 625
                :**  *  * *         * ***** ***   * * * *      :
4w7s_A_1     377:DIPNVSLVVNFQISKKUDDYIHRIGRTGRAANEGTAVSFVSAAEDE: 422
SecStr          :    BSEEEESS  SSHHHHHHHHTTBS TT EEEEEEEE S S H:    
ExpBur          :ebbebebbbbbbbbeebebbeebbebbbeeeeebbbbbbbbeebee:    


Input Residue Numbers for Focused Sites

ex) 2,15,123