Protein Model on 4tz6_A_1_B_1 (TEMPLATE: 4tz6 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(DDX1_HUMAN) A 1 (A) polymer(polypeptide(L)) [504 aa] ATP-dependent RNA helicase MSS116, mitochondrial :MS116_YEAST
2 b B 1 (B) polymer(polyribonucleotide) RNA (5'-R(P*AP*AP*AP*AP*AP*AP*A)-3') 294P 295S(T) 296R 324I(V) 325G 326G 346T 348G 349R 352D 374G(R) 380Y(F) 514R(P) 515T 546H 547G 554R 572T 573D 574V (identity: 75.0 %/36.0 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:4tz6_A_1 identity=36.0%
queryA         1:MAAFSEMGVM-PEIAQAVEEMDWLLPTDIQAESIPLILGGGD--VLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYD:  97
                :     * **   **  *   *     *  *   *  **   *  *   * ** *** ** **  *    *  * *                         :
4tz6_A_1      17:LDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQ-------------------------:  91
SecStr          :HHHHHHHTSS HHHHHHHHTTT SS  HHHHHHHHHHH  SSEEEEEE  TTS  HHHHHHHHHHHHHTTTTSST-------------------------:    
ExpBur          :beebeeeeebeebbbbbbeebeeeebeebbbbbbebbeeeeebbbbbbbbbbeebbbbbbbbbbbbbbebbeeee-------------------------:    

queryA        98:RGSAFAIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLD: 197
                :                                                                                                    :
4tz6_A_1      -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       198:IDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP---KALIVEP: 294
                :                                                                                             ** ** *:
4tz6_A_1      92:------------------------------------------------------------------------------------------YMVKAVIVAP: 101
SecStr          :------------------------------------------------------------------------------------------TS  EEEE S:    
ExpBur          :------------------------------------------------------------------------------------------ebbbbbbbbb:    
Contact         :                                                                                                   b

queryA       295:SRELAEQTLNNIKQFKKYIDNPKLRE---LLIIGGV---AARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFL---VLDEADGLLSQGYSDFIN: 385
                : * ** *     *       *  *         **    **      *     **  ***** *     *      **    ****** **  *  *   :
4tz6_A_1     102:TRDLALQIEAEVKKIHDM--NYGLKKYACVSLVGGTDFRAAMNKMNKLRP--NIVIATPGRLIDVLE--KYSNKFFRFVDYKVLDEADRLLEIGFRDDLE: 195
SecStr          :SHHHHHHHHHHHHHHHHH-- GGGTTS EEEE TTS HHHHHHHHHHH  --SEEEE HHHHHHHHH--HHHHHH TT  EEEEETHHHHTSTTTHHHHH:    
ExpBur          :bebbbbbbbeebebbbee--beebeebbbbbbbbeeebeebbeebeeeeb--bbbbbbbebbbebbe--ebbeebbebbbbbbbbbbbebbbeeeeeebe:    
Contact         :bb                              bbb                      b bb  b                        b     b     

queryA       386:RMHNQIPQVTS-DGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEM: 484
                :          *           ****    * **   **       *   *      *              **   *                ***   :
4tz6_A_1     196:TISGILNEKNSKSADNIKTLLFSATLDD-KVQKLANNIMNKKECLFLDTVDKNEPEAH--------------ERIDQSVVISEKF---------ANSIFA: 271
SecStr          :HHHHHHHHH SS TT  EEEEEESS  S-HHHHHTTTT  SSEEEEEESS SSS SS --------------TTEEEEEEEESSS---------THHHHH:    
ExpBur          :ebbeebbebbeeeeebbbbbbbbbbbee-ebbeebeebbebeebebbbebeeeeebbb--------------eebebbbbebeeb---------bbbbbb:    

queryA       485:WSEAIKILKGEYAVRAIKEHKMD-QAIIFCRT----KIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGI: 579
                :  * **          ***      ****  *       *  *   *                   **      *     ****     * **** *** :
4tz6_A_1     272:AVEHIK--------KQIKERDSNYKAIIFAPTVKFTSFLCSILKNEF----------KKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGM: 353
SecStr          :HHHHHH--------HHHHHTTT  EEEEE SSHHHHHHHHHHHHHHH----------TTTS EEEESTTS HHHHHHHHHHHHH SSEEEEE GGGTSS :    
ExpBur          :bbebbe--------ebbeeeeeebbbbbbbbbeebbebbbebbeebb----------eeebebbebbeeeebeebeebbeebeebeebbbbbbbbbbbbb:    
Contact         :                              bbbb                                bb      b                 bbb     

queryA       580:DIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV: 619
                :*   *  *     * *  ** *****  *    *      :
4tz6_A_1     354:DFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFI: 393
SecStr          :  TT  EEEEES  SSTHHHHHHHTTSS TT  EEEEEEE:    
ExpBur          :ebeebebbbbbbbbeeebbbbbbbbbbbbeeeebbbbbbb:    


Input Residue Numbers for Focused Sites

ex) 2,15,123