CurrentView:HTML5 Change to:[JAVA] |
DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(DDX1_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [508 aa] | ATP-dependent RNA helicase MSS116, mitochondrial :MS116_YEAST | |
2 | b | C 1 (A) | non-polymer(GDP) | GUANOSINE-5'-DIPHOSPHATE | 22W(F) 23L(P) 24L(G) 25P(L) 26T 29Q 47E(K) 49G 50S(T) 51G 52K 53T 54G(F) 580D 608R 609A(S) (identity: 50.0 %/36.0 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:4tz0_A_1 identity=36.0% |
queryA 1:MAAFSEMGVM-PEIAQAVEEMDWLLPTDIQAESIPLILGGGD--VLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYD: 97 : * ** ** * * * * * ** * * * ** *** ** ** * * * * : 4tz0_A_1 17:LDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQ-------------------------: 91 SecStr :HHHHHTTTSS HHHHHHHHTTT SS HHHHHHHHHHSS SS EEEEE TTS HHHHHHHHHHHHHHHTTTSST-------------------------: ExpBur :beebeeeeebeebbbbbbeebeeeebeebbbbbbebbbeeeebbbbbbbbbbbebbbbbbbbbbbbbeeebeeee-------------------------: Contact : bbbbb b b bbbbbb queryA 98:RGSAFAIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLD: 197 : : 4tz0_A_1 -1:----------------------------------------------------------------------------------------------------: -1 SecStr :----------------------------------------------------------------------------------------------------: ExpBur :----------------------------------------------------------------------------------------------------: queryA 198:IDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP---KALIVEP: 294 : ** ** *: 4tz0_A_1 92:------------------------------------------------------------------------------------------YMVKAVIVAP: 101 SecStr :------------------------------------------------------------------------------------------TS EEEE S: ExpBur :------------------------------------------------------------------------------------------ebbbbbbbbb: queryA 295:SRELAEQTLNNIKQFKKYIDNPKLRE---LLIIGGV---AARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFL---VLDEADGLLSQGYSDFIN: 385 : * ** * * * * ** ** * ** ***** * * ** ****** ** * * : 4tz0_A_1 102:TRDLALQIEAEVKKIHDM--NYGLKKYACVSLVGGTDFRAAMNKMNKLRP--NIVIATPGRLIDVLE--KYSNKFFRFVDYKVLDEADRLLEIGFRDDLE: 195 SecStr :SHHHHHHHHHHHHHHHHH-- GGGTTS EEEE TTS HHHHHHHHHHH --SEEEE HHHHHHHHH--HHHHHH TT EEEEETHHHHTSTTTHHHHH: ExpBur :bebbbbbbbebbeebbee--eeebeebbbbbbbbeeeeeebbeebeeebb--bbbbbbbebbbebbe--eebeebbeebebbbbbbbbebbeeebeeebe: queryA 386:RMHNQIPQVTS-DGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEM: 484 : * **** * ** ** * * * ** * *** : 4tz0_A_1 196:TISGILNEKNSKSADNIKTLLFSATLDD-KVQKLANNIMNKKECLFLDTVDKNEPEAH--------------ERIDQSVVISEKF---------ANSIFA: 271 SecStr :HHHHHHHHH SS TT EEEEEESS S-HHHHHTTTT SSEEEEE SS SSS SS --------------TTEEEEEEEESST---------THHHHH: ExpBur :ebbeebbeebeeeeebbbbbbbbbbbee-ebbeebeebbebeebbbbbbbeeeeebbb--------------eebebbbbbbbeb---------bbbbbb: queryA 485:WSEAIKILKGEYAVRAIKEHKMD-QAIIFCRT----KIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGI: 579 : * ** *** **** * * * * ** * **** * **** *** : 4tz0_A_1 272:AVEHIK--------KQIKERDSNYKAIIFAPTVKFTSFLCSILKNEF----------KKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGM: 353 SecStr :HHHHHH--------HHHHHTTT EEEEE S HHHHHHHHHHHHHHH----------TTTS EEEESTTS HHHHHHHHHHHHH SSEEEEE GGGSSS : ExpBur :bbebbe--------ebbeeeeeebbbbbbbbbeebbebbbebbeeeb----------eeebebbebbeeeebeebeebbeebeeeeebbbbbbbbbbbbb: queryA 580:DIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV: 619 :* * * * * ** ***** * * : 4tz0_A_1 354:DFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFI: 393 SecStr : TT EEEEES SSTTHHHHHHTTSS TT EEEEEEE: ExpBur :ebeebebbbbbbbbebebbbbbbbbbbbbeeeebbbbbbb: Contact :b bb |