CurrentView:HTML5 Change to:[JAVA] |
DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(DDX1_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [508 aa] | ATP-dependent RNA helicase MSS116, mitochondrial :MS116_YEAST | |
2 | b | E 1 (A) | non-polymer(BEF) | BERYLLIUM TRIFLUORIDE ION | 48T 49G 52K 371E 408A 578G 605R 608R (identity: 100.0 %/36.0 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:4tyw_A_1 identity=36.0% |
queryA 1:MAAFSEMGVM-PEIAQAVEEMDWLLPTDIQAESIPLILGGGD--VLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYD: 97 : * ** ** * * * * * ** * * * ** *** ** ** * * * * : 4tyw_A_1 18:LDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQ-------------------------: 92 SecStr :HHHHHHHTSS HHHHHHHHTTT SS HHHHHHHHHHHS SSEEEEEE TTS HHHHHHHHHHHHHHTTTTSS -------------------------: ExpBur :beebbeeebbeeebbebbeebeeeebeebbbbbbebbeeeeebbbbbbbbbbbebbbbbbbbbbbbbbebeeeee-------------------------: Contact : bb b queryA 98:RGSAFAIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLD: 197 : : 4tyw_A_1 -1:----------------------------------------------------------------------------------------------------: -1 SecStr :----------------------------------------------------------------------------------------------------: ExpBur :----------------------------------------------------------------------------------------------------: queryA 198:IDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP---KALIVEP: 294 : ** ** *: 4tyw_A_1 93:------------------------------------------------------------------------------------------YMVKAVIVAP: 102 SecStr :------------------------------------------------------------------------------------------SS EEEE S: ExpBur :------------------------------------------------------------------------------------------ebbbbbbbbb: queryA 295:SRELAEQTLNNIKQFKKYIDNPKLRE---LLIIGGV---AARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFL---VLDEADGLLSQGYSDFIN: 385 : * ** * * * * ** ** * ** ***** * * ** ****** ** * * : 4tyw_A_1 103:TRDLALQIEAEVKKIHDM--NYGLKKYACVSLVGGTDFRAAMNKMNKLRP--NIVIATPGRLIDVLE--KYSNKFFRFVDYKVLDEADRLLEIGFRDDLE: 196 SecStr :SHHHHHHHHHHHHHHHHH-- GGGGGS EEEE TTS HHHHHHHHHHH --SEEEE HHHHHHHHH--HHHHHH TT EEEEETHHHHTSTTTHHHHH: ExpBur :bebbbbbbbebbeebbee--beebeebbbbbbbbeeeeeebbeebeeeeb--bbbbbbbebbbebbe--eebeebbebbbbbbbbbbbebbeeebeeebe: Contact : b queryA 386:RMHNQIPQVTS-DGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEM: 484 : * **** * ** ** * * * ** * *** : 4tyw_A_1 197:TISGILNEKNSKSADNIKTLLFSATLDD-KVQKLANNIMNKKECLFLDTVDKNEPEAH--------------ERIDQSVVISEKF---------ANSIFA: 272 SecStr :HHHHHHHHH SS TT EEEEEESS S-HHHHHTTTT SSEEEEEESS SSS SS --------------TTEEEEEEEESSS---------TTHHHH: ExpBur :ebbebbbebbeeeeeebbbbbbbbbbee-ebbebbeebbbbebbebbbbbeeeeebbb--------------eebebbbbbbeeb---------bbbbbb: Contact : b queryA 485:WSEAIKILKGEYAVRAIKEHKMD-QAIIFCRT----KIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGI: 579 : * ** *** **** * * * * ** * **** * **** *** : 4tyw_A_1 273:AVEHIK--------KQIKERDSNYKAIIFAPTVKFTSFLCSILKNEF----------KKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGM: 354 SecStr :HHHHHH--------HHHHHHTT EEEEE S HHHHHHHHHHHHHHH----------TTTS EEEESTTS HHHHHHHHHHHHH SSEEEEE GGGTSS : ExpBur :bbebbb--------ebbeeeeeebbbbbbbbbeebbebbbbbbeebb----------eeebebbbbbeeeebeebeebbeebeeeebbbbbbbbbbbbbb: Contact : b queryA 580:DIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV: 619 :* * * * * ** ***** * * : 4tyw_A_1 355:DFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFI: 394 SecStr : TT EEEEES SSTTHHHHHHTTSS TT EEEEEEE: ExpBur :ebeebebbbbbbbbebebbbbbbbbbbbbeeeebbbbbbb: Contact : b b |