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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(DDX1_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [430 aa] | BMVLG PROTEIN :O01378_BOMMO | |
2 | b | B 1 (D) | polymer(polyribonucleotide) | 5'-R(*UP*GP*AP*CP*AP*UP)-3' | 294P 295S(T) 296R 325G 326G 329A(V) 346T 347P 348G 349R 352D 380Y(F) 514R(E) 515T 516K 546H 547G 554R 572T 573D(A) 574V (identity: 76.2 %/36.5 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:4d26_A_1 identity=36.5% |
queryA 25:PTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCRA: 124 :** ** ** * * * * ****** ** * * ** : 4d26_A_1 73:PTPIQKNAIPIIMSGRDLMGCAQTGSGKTAAFLVPIINMLLQDPKD------------------------------------------------------: 118 SecStr : HHHHHHHHHHHTT EEEE TTS HHHHHHHHHHHHHHHS ------------------------------------------------------: ExpBur :bbbbbbbbbbbbeeebbbbbbbbbbbebbbbbbbbbbbbbbeeeee------------------------------------------------------: queryA 125:TKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKN: 224 : : 4d26_A_1 -1:----------------------------------------------------------------------------------------------------: -1 SecStr :----------------------------------------------------------------------------------------------------: ExpBur :----------------------------------------------------------------------------------------------------: queryA 225:QALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNA---------PKALIVEPSRELAEQTLNNIKQFKKYIDN: 315 : * ** * *** * * * : 4d26_A_1 119:--------------------------------------------------------------LISENGCAQPQVIIVSPTRELTLQIFNEARKFSY---G: 153 SecStr :-------------------------------------------------------------- EETTEE SEEEE SSHHHHHHHHHHHHHHTT---T: ExpBur :--------------------------------------------------------------eeeeeebbbbbbbbbbbbebbbebbbebbbbbbe---e: Contact : bbb queryA 316:PKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDV: 415 : * ** * * * * * * ***** * * *** *** ** * * * * * ** * *** * : 4d26_A_1 154:SVLKVAVAYGGTAVRHQGDNIARGCHILVATPGRLHDFVERNRVSFGSVRFVVLDQADCMLDMGFMPSIEKMMLH-PTMVETTKR-QTLMFSATFPE-DI: 250 SecStr :SS EEEE TTS HHHHHHHHTT SEEEE HHHHHHHHHTTSB TT EEEEETHHHHTSTTTHHHHHHHHT -TTS GGGS-EEEEEES H-HH: ExpBur :eebebbbbbbbbbeeebbeebeebbbbbbbbbebbbebbeeeebbbeebbbbbbbbbbbbbeeeebebbeebbee-eebeeeeeb-bbbbbbbbbee-eb: Contact : bb b bbbb b b queryA 416:KKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRT: 515 : * * * ** * * * * * * *: 4d26_A_1 251:QHLAGRFLN----------------------------NYLFVAVGIVGGASTDVE------------QIFIEVTKYEKRNSLKQLIEENDGKRILVFVET: 310 SecStr :HHHHTTS S----------------------------S EEEEESSTT TTEE------------EEEEE TTTHHHHHHHHHHTTTT EEEE S : ExpBur :beebeebbe----------------------------eebbbbbeeebbbbebbe------------bebeebeeeebeebbeebbeebeeebbbbbbee: Contact : bb queryA 516:KIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLA: 615 :* * * * **** ** * ** * * * ***** ** * * * ** ******* ** * *: 4d26_A_1 311:KRNADFIAAMLSEQ---------QLLTSSIHGDRMQREREEALQNFKSGKHCILVATAVAARGLDIKNVDIVVNYDLPKSIDEYVHRIGRTGRVGNRGKA: 401 SecStr :HHHHHHHHHHHHHT---------T EEEE TTS HHHHHHHHHHHHHSS SEEEE GGGSSS TT EEEESS S HHHHHHHHTTSS TT EEE: ExpBur :eebbeebbebbeee---------eeebbbbbeeeebeebbebbebbeeeebebbbbbebbbbbbebeebebbbbbbbbeebbebbbbbbbbbbbbeebeb: Contact :b bb b bbb queryA 616:ISLVATEKE: 624 : * : 4d26_A_1 402:VSFYDSDQD: 410 SecStr :EEEE HHHH: ExpBur :bbbbbeeeb: |