Protein Model on 4ct4_D_1_H_1 (TEMPLATE: 4ct4 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:2]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(DDX1_HUMAN) D 1 (D) polymer(polypeptide(L)) [364 aa] PROBABLE ATP-DEPENDENT RNA HELICASE DDX6 :DDX6_HUMAN
2 b H 1 (D) non-polymer(MG) MAGNESIUM ION 593P 594D(K) 595E(L) 598N(T) (identity: 25.0 %/35.4 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:4ct4_D_1 identity=35.4%
queryA         4:FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA: 103
                :*       *      ** *  *  ** ****  * * * *  *  * ** **  **                                            :
4ct4_D_1       7:FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLE-----------------------------------------:  65
SecStr          :GGGG   HHHHHHHHHTT  S  HHHHHHHHHHHTT  EEEE  SSGGGHHHHHHHHHH-----------------------------------------:    
ExpBur          :beebebeeebeebbeeeebeebbebbeebbebbeeeebbbbebbeebbbbbbbbbbbbb-----------------------------------------:    

queryA       104:IGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHV: 203
                :                                                                                                    :
4ct4_D_1      -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       204:KFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP---------KALIVEP: 294
                :                                                                                              *    *:
4ct4_D_1      66:------------------------------------------------------------------------------------RLDLKKDNIQAMVIVP:  81
SecStr          :------------------------------------------------------------------------------------H  TTS S  EEEE S:    
ExpBur          :------------------------------------------------------------------------------------ebeeeeeebbbbbbbb:    

queryA       295:SRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQV: 394
                : **** *      *  *     *       **   **    *   *  *  ****  **   *      *   ****** ****   **   *   *   :
4ct4_D_1      82:TRELALQVSQICIQVSKHMGGAKV--MATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQ---DFVQIMEDIILTL: 176
SecStr          :SHHHHHHHHHHHHHHTTTSSS  E--EEE TTS HHHHHHHTTS  SEEEE HHHHHHHHHTTSS  TT  EEEEESHHHHTST---TTHHHHHHHHTTS:    
ExpBur          :eebbbebbbebbeebbeebeebeb--bbbbeeeeeeebeeebeeebbbbbbbbebbbebbeeebbebeebebbbbbbbbebbee---eeeeebeebbeeb:    

queryA       395:TSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKG: 494
                :    *  *    ***     * *        *    *  *                 * *              **               *        :
4ct4_D_1     177:P---KNRQILLYSATF-PLSVQKFMNSHLQKPYEINLMEELTLKGVTQYYAYV----TER------------QKVHCLNT---------LFSRL------: 241
SecStr          : ---TT EEEEEES  - HHHHHHHHHH SS EEE   GGGGGTT EEEEEE ---- TT------------THHHHHHH---------HTTTS------:    
ExpBur          :e---eebbbbbbbeeb-eeebeebbeebbeeeeebeeebeeebeebebebbeb----eee------------ebbebbee---------beeee------:    

queryA       495:EYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPD: 594
                :             * ****        *     * *          **   *       *      *  *  * * ***     ***  *  ***   * :
4ct4_D_1     242:----------QINQSIIFCNSSQRVELLAKKISQLG---------YSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLXXXXIDIQAVNVVINFDFPK: 322
SecStr          :----------  SEEEEE SSHHHHHHHHHHHHHTT---------  EEEE TTS HHHHHHHHHHHHTTSSSEEEE   ----   TTEEEEEESS  S:    
ExpBur          :----------ebebbbbbbeebeebeebbeebeeee---------bebeebbeebeeeebeebbeebeeeebebbbbbee----eebeebebbbbbbbbe:    
Contact         :                                                                                                  bb

queryA       595:EKQNYVHRIGRVGRAERMGLAISLVA: 620
                :    * ***** **    **** *  :
4ct4_D_1     323:LAETYLHRIGRSGRFGHLGLAINLIT: 348
SecStr          : HHHHHHHH  SS SS   EEEEEE :    
ExpBur          :ebeebbebbbbbeeeeebebbbbbbb:    
Contact         :b  b                                                                                                


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