Protein Model on 4ct4_D_1_C_1
(TEMPLATE: 
4ct4
)Protein Model on 4ct4_D_1_C_1
(TEMPLATE: 4ct4
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(DDX1_HUMAN) | D 1 (D) | polymer(polypeptide(L)) [364 aa] | PROBABLE ATP-DEPENDENT RNA HELICASE DDX6 :DDX6_HUMAN | |
| 2 | b | C 1 (C) | polymer(polypeptide(L)) [242 aa] | CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 1 :CNOT1_HUMAN | 11P(R) 14A(L) 15Q(M) 18E(F) 19E 23L(E) 312Y(H) 443H(Y) 485W(F) 486S 487E(R) 488A(L) 505K(Q) 506M(I) 507D(N) 508Q 529Q(L) 530G 540F(Y) 541S 564G 565D(L) 567R 568F(N) 583G(A) 585P(N) 613G 614L (identity: 32.1 %/35.4 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:4ct4_D_1 identity=35.4% |
queryA 4:FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA: 103
:* * ** * * ** **** * * * * * * ** ** ** :
4ct4_D_1 7:FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLE-----------------------------------------: 65
SecStr :GGGG HHHHHHHHHTT S HHHHHHHHHHHTT EEEE SSGGGHHHHHHHHHH-----------------------------------------:
ExpBur :beebebeeebeebbeeeebeebbebbeebbebbeeeebbbbebbeebbbbbbbbbbbbb-----------------------------------------:
Contact : b bb bb b
queryA 104:IGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHV: 203
: :
4ct4_D_1 -1:----------------------------------------------------------------------------------------------------: -1
SecStr :----------------------------------------------------------------------------------------------------:
ExpBur :----------------------------------------------------------------------------------------------------:
queryA 204:KFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP---------KALIVEP: 294
: * *:
4ct4_D_1 66:------------------------------------------------------------------------------------RLDLKKDNIQAMVIVP: 81
SecStr :------------------------------------------------------------------------------------H TTS S EEEE S:
ExpBur :------------------------------------------------------------------------------------ebeeeeeebbbbbbbb:
queryA 295:SRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQV: 394
: **** * * * * ** ** * * * **** ** * * ****** **** ** * * :
4ct4_D_1 82:TRELALQVSQICIQVSKHMGGAKV--MATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQ---DFVQIMEDIILTL: 176
SecStr :SHHHHHHHHHHHHHHTTTSSS E--EEE TTS HHHHHHHTTS SEEEE HHHHHHHHHTTSS TT EEEEESHHHHTST---TTHHHHHHHHTTS:
ExpBur :eebbbebbbebbeebbeebeebeb--bbbbeeeeeeebeeebeeebbbbbbbbebbbebbeeebbebeebebbbbbbbbebbee---eeeeebeebbeeb:
Contact : b
queryA 395:TSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKG: 494
: * * *** * * * * * * * ** * :
4ct4_D_1 177:P---KNRQILLYSATF-PLSVQKFMNSHLQKPYEINLMEELTLKGVTQYYAYV----TER------------QKVHCLNT---------LFSRL------: 241
SecStr : ---TT EEEEEES - HHHHHHHHHH SS EEE GGGGGTT EEEEEE ---- TT------------THHHHHHH---------HTTTS------:
ExpBur :e---eebbbbbbbeeb-eeebeebbeebbeeeeebeeebeeebeebebebbeb----eee------------ebbebbee---------beeee------:
Contact : b bbbb
queryA 495:EYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPD: 594
: * **** * * * ** * * * * * * *** *** * *** * :
4ct4_D_1 242:----------QINQSIIFCNSSQRVELLAKKISQLG---------YSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLXXXXIDIQAVNVVINFDFPK: 322
SecStr :---------- SEEEEE SSHHHHHHHHHHHHHTT--------- EEEE TTS HHHHHHHHHHHHTTSSSEEEE ---- TTEEEEEESS S:
ExpBur :----------ebebbbbbbeebeebeebbeebeeee---------bebeebbeebeeeebeebbeebeeeebebbbbbee----eebeebebbbbbbbbe:
Contact : bbbb bb bb bb bb b b
queryA 595:EKQNYVHRIGRVGRAERMGLAISLVA: 620
: * ***** ** **** * :
4ct4_D_1 323:LAETYLHRIGRSGRFGHLGLAINLIT: 348
SecStr : HHHHHHHH SS SS EEEEEE :
ExpBur :ebeebbebbbbbeeeeebebbbbbbb:
Contact : bb
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[assembly_id:2]
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