Protein Model on 3rrn_A_1_D_1 (TEMPLATE: 3rrn )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]


MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(DDX1_HUMAN) A 1 (A) polymer(polypeptide(L)) [389 aa] ATP-dependent RNA helicase DBP5 :DBP5_YEAST
2 b D 1 (A) non-polymer(IHP) INOSITOL HEXAKISPHOSPHATE 38G(H) 39G(N) (identity: 0.0 %/35.0 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:3rrn_A_1 identity=35.0%
queryA         3:AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGG--GDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGS: 100
                : * * *  **       *    *  **    ** *             * *** ***                                           :
3rrn_A_1       6:SFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTML---------------------------------------:  66
SecStr          :STTTTT  HHHHHHHHHTT  S  HHHHHHHHHHS SS   EEE   TTSSHHHHHHHHHH---------------------------------------:    
ExpBur          :ebeebebeeebbebbeebeeeebbebbbebbbebbeeeeeebbbbbebeebbbbbbbbbbb---------------------------------------:    
Contact         :                                   bb                                                               

queryA       101:AFAIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDK: 200
                :                                                                                                    :
3rrn_A_1      -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       201:GHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPN--------APKALIV: 292
                :                                                                                              * *   :
3rrn_A_1      67:-------------------------------------------------------------------------------------TRVNPEDASPQAICL:  81
SecStr          :-------------------------------------------------------------------------------------HT  SSS S  EEEE:    
ExpBur          :-------------------------------------------------------------------------------------ebbeeeeebbbbbbb:    

queryA       293:EPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLL-SQGYSDFINRMHNQI: 391
                : ****** ***       *     *    **                    *****   **       *      ******  *  **  *   *     :
3rrn_A_1      82:APSRELARQTLEVVQEMGKFT---KITSQLIVPDSFEKNK----QINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFL: 174
SecStr          : SSHHHHHHHHHHHHHHTTSS---   EEEESTTSS SS ----    SEEEE HHHHHHHHHTTSS  SS  EEEES HHHHHHSTTHHHHHHHHHHTS:    
ExpBur          :bbeeebbeebbebbeebbeeb---ebeeebbbeeebeeee----ebebbbbbbbbebbbebbeeebbebeebebbbbbbbbbbeeeebbbeebbebeeeb:    

queryA       392:PQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKI: 491
                :*  *      *    ***     *     **        *       *             *                                      :
3rrn_A_1     175:PKDT------QLVLFSATFAD-AVRQYAKKIVPNANTLELQXXXXXXDAIKQLYMDCKNEADKF----------------------------------DV: 233
SecStr          : TTS------EEEEE S   H-HHHHHHHHHSTT EEE   ------  EEEEEEE SSTTHHH----------------------------------HH:    
ExpBur          :beeb------bbbbbbbebee-ebeebbeebbeebeebeee------eebbbbbbebeeeeebb----------------------------------eb:    

queryA       492:LKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVT: 591
                :*   * *  *        ***  **     *        *     **  *   ****    **      *  *    ** * * ******  *  * *  :
3rrn_A_1     234:LTELYGVMTIGS-----SIIFVATKKTANVLY-------GKLKSEGHEVSI--LHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYD: 319
SecStr          :HHHHTTSS  SE-----EEEE S HHHHHHHH-------HHHHTTT  EEE--E SSS HHHHHHHHHHHHTTS SEEEE S   SS   S EEEEEESS:    
ExpBur          :bbebbebbeeeb-----bbbbbeeeebbeebe-------eebeeeeeebbb--bbeeeeeeebeebbebbeeeebebbbbbeebeebbebeebebbbbbb:    

queryA       592:LPD------EKQNYVHRIGRVGRAERMGLAISLV: 619
                :**           * ***** **  * * *** *:
3rrn_A_1     320:LPTLANGQADPATYIHRIGRTGRFGRKGVAISFV: 353
SecStr          :  B TTS B HHHHHHHHTTSS TT  EEEEEEE:    
ExpBur          :bbeeeeeebbbeebeebbebbbbeeeebbbbbbb:    


Input Residue Numbers for Focused Sites

ex) 2,15,123