Protein Model on 3rrm_A_1_C_1 (TEMPLATE: 3rrm )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]


MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(DDX1_HUMAN) A 1 (A) polymer(polypeptide(L)) [375 aa] ATP-dependent RNA helicase DBP5 :DBP5_YEAST
2 b C 1 (C) polymer(polypeptide(L)) [370 aa] Nucleoporin NUP159 :NU159_YEAST 294P 296R 297E 325G(P) 326G(D) 330R(K) 331D(N) 346T 347P 348G 349R(T) 352D 355S(R) 356T(R) 377S(Q) 378Q 380Y(L) 382D 385N(I) 386R 389N(R) (identity: 47.6 %/33.4 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:3rrm_A_1 identity=33.4%
queryA         8:GVMPEIAQAVEEMDWLLPTDIQAESIPLILGG--GDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIG: 105
                :*  **       *    *  **    ** *             * *** ***                                                :
3rrm_A_1      11:GLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTML--------------------------------------------:  66
SecStr          :   HHHHHHHHHTT  S  HHHHHHHHHHHSSS   EEEE  TTSSHHHHHHHHHH--------------------------------------------:    
ExpBur          :eeeeebeebbeebeeeeebebbeebbeebbeeeeebbbbbbeeeebbbbbbbbbbb--------------------------------------------:    

queryA       106:SDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKF: 205
                :                                                                                                    :
3rrm_A_1      -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       206:SKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPN--------APKALIVEPSRE: 297
                :                                                                                         * *    ****:
3rrm_A_1      67:--------------------------------------------------------------------------------TRVNPEDASPQAICLAPSRE:  86
SecStr          :--------------------------------------------------------------------------------HHS TTS S  EEEE SSHH:    
ExpBur          :--------------------------------------------------------------------------------ebbeeeeebbbbbbbbbeee:    
Contact         :                                                                                                b bb

queryA       298:LAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLL-SQGYSDFINRMHNQIPQVTS: 396
                :** ***       *     *    **                    *****   **       *      ******  *  **  *   *     *  * :
3rrm_A_1      87:LARQTLEVVQEMGKFT---KITSQLIVPDSFEKNK----QINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDT-: 178
SecStr          :HHHHHHHHHHHHTSSS---   EEEESTTSS TT ---- B  SEEEE HHHHHHHHHTT B  TT  EEEE  HHHHHHSTTHHHHHHHHHHHS TTS-:    
ExpBur          :bbeebbeebeebbeeb---ebeeebbbeeebeeee----ebebbbbbbbbebbbebbeeebbebeebebbbbbebbebeeeeebbebbeebeeebeeeb-:    
Contact         :                           bb   bb              bbbb  b  bb                     bb b b  bb  b       

queryA       397:DGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEY: 496
                :     *    ***     *     **        *       *             *                                      *   *:
3rrm_A_1     179:-----QLVLFSATFAD-AVRQYAKKIVPNANTLELXXXXVNVDAIKQLYMDCKNEADKF----------------------------------DVLTELY: 238
SecStr          :-----EEEEE S   H-HHHHHHHHHS S EEEE ----  GGGEEEEEEE SSTTHHH----------------------------------HHHHHHT:    
ExpBur          :-----bbbbbbeeeee-ebeebbeebbeebeebee----eeeeebbbbbbebeeeeebe----------------------------------ebbbebb:    

queryA       497:AVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPD--: 594
                : *  *        ***  **     *        *     **  *   ****    **      *  *    ** *       **  *  * *  **   :
3rrm_A_1     239:GVMTI-----GSSIIFVATKKTANVLY-------GKLKSEGHEVS--ILHGDLQTQERDRLIDDFREGRSKVLITTNXXXXXXDIPTVSMVVNYDLPTLA: 324
SecStr          :TTS  -----SSEEEE SSHHHHHHHH-------HHHHHHT  EE--EE SSS HHHHHHHHHHHHTTS SEEEE  ------    BSEEEESS  B T:    
ExpBur          :ebbee-----eebbbbbeeeebbeebe-------eebeeeeeebb--bbbeebeeeeeeebbebbeeeebebbbbbe------ebeebebbbbbebbeee:    

queryA       595:----EKQNYVHRIGRVGRAERMGLAISLV: 619
                :        * ***** **  * * *** *:
3rrm_A_1     325:NGQADPATYIHRIGRTGRFGRKGVAISFV: 353
SecStr          :TS B HHHHHHHHHTBS SS  EEEEEEE:    
ExpBur          :eeebbbeebeebbbbbebeeeebbbbbbb:    


Input Residue Numbers for Focused Sites

ex) 2,15,123