[pdbjlvh2]Protein Model on 3rrm_A_1_B

Protein Model on 3rrm_A_1_B_1 (TEMPLATE: 3rrm )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(DDX1_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [375 aa]	ATP-dependent RNA helicase DBP5 :DBP5_YEAST
2	b		B 1 (B)	polymer(polypeptide(L)) [295 aa]	Nucleoporin GLE1 :GLE1_YEAST	15Q(K) 18E(Y) 21D(K) 23L(Q) 312Y(F) 496Y 497A(G) 498V 499R(M) 500A(T) 501I 507D(G) 536K(E) 537G 538H 539Q(E) 563K(E) 564G 565D(R) 567R(K) 611R (identity: 33.3 %/33.4 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:3rrm_A_1 identity=33.4%

queryA         8:GVMPEIAQAVEEMDWLLPTDIQAESIPLILGG--GDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIG: 105
                :*  **       *    *  **    ** *             * *** ***                                                :
3rrm_A_1      11:GLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTML--------------------------------------------:  66
SecStr          :   HHHHHHHHHTT  S  HHHHHHHHHHHSSS   EEEE  TTSSHHHHHHHHHH--------------------------------------------:    
ExpBur          :eeeeebeebbeebeeeeebebbeebbeebbeeeeebbbbbbeeeebbbbbbbbbbb--------------------------------------------:    
Contact         :       b  b  b b                                                                                    

queryA       106:SDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKF: 205
                :                                                                                                    :
3rrm_A_1      -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       206:SKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPN--------APKALIVEPSRE: 297
                :                                                                                         * *    ****:
3rrm_A_1      67:--------------------------------------------------------------------------------TRVNPEDASPQAICLAPSRE:  86
SecStr          :--------------------------------------------------------------------------------HHS TTS S  EEEE SSHH:    
ExpBur          :--------------------------------------------------------------------------------ebbeeeeebbbbbbbbbeee:    

queryA       298:LAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLL-SQGYSDFINRMHNQIPQVTS: 396
                :** ***       *     *    **                    *****   **       *      ******  *  **  *   *     *  * :
3rrm_A_1      87:LARQTLEVVQEMGKFT---KITSQLIVPDSFEKNK----QINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDT-: 178
SecStr          :HHHHHHHHHHHHTSSS---   EEEESTTSS TT ---- B  SEEEE HHHHHHHHHTT B  TT  EEEE  HHHHHHSTTHHHHHHHHHHHS TTS-:    
ExpBur          :bbeebbeebeebbeeb---ebeeebbbeeebeeee----ebebbbbbbbbebbbebbeeebbebeebebbbbbebbebeeeeebbebbeebeeebeeeb-:    
Contact         :              b                                                                                     

queryA       397:DGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEY: 496
                :     *    ***     *     **        *       *             *                                      *   *:
3rrm_A_1     179:-----QLVLFSATFAD-AVRQYAKKIVPNANTLELXXXXVNVDAIKQLYMDCKNEADKF----------------------------------DVLTELY: 238
SecStr          :-----EEEEE S   H-HHHHHHHHHS S EEEE ----  GGGEEEEEEE SSTTHHH----------------------------------HHHHHHT:    
ExpBur          :-----bbbbbbeeeee-ebeebbeebbeebeebee----eeeeebbbbbbebeeeeebe----------------------------------ebbbebb:    
Contact         :                                                                                                   b

queryA       497:AVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPD--: 594
                : *  *        ***  **     *        *     **  *   ****    **      *  *    ** *       **  *  * *  **   :
3rrm_A_1     239:GVMTI-----GSSIIFVATKKTANVLY-------GKLKSEGHEVS--ILHGDLQTQERDRLIDDFREGRSKVLITTNXXXXXXDIPTVSMVVNYDLPTLA: 324
SecStr          :TTS  -----SSEEEE SSHHHHHHHH-------HHHHHHT  EE--EE SSS HHHHHHHHHHHHTTS SEEEE  ------    BSEEEESS  B T:    
ExpBur          :ebbee-----eebbbbbeeeebbeebe-------eebeeeeeebb--bbbeebeeeeeeebbebbeeeebebbbbbe------ebeebebbbbbebbeee:    
Contact         :bbbbb     b                            bbbb                       bbb b                             

queryA       595:----EKQNYVHRIGRVGRAERMGLAISLV: 619
                :        * ***** **  * * *** *:
3rrm_A_1     325:NGQADPATYIHRIGRTGRFGRKGVAISFV: 353
SecStr          :TS B HHHHHHHHHTBS SS  EEEEEEE:    
ExpBur          :eeebbbeebeebbbbbebeeeebbbbbbb:    
Contact         :                    b

Protein Model on 3rrm_A_1_B_1 (TEMPLATE: 3rrm )

Input Residue Numbers for Focused Sites