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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(DDX1_HUMAN) | D 1 (D) | polymer(polypeptide(L)) [202 aa] | Heat resistant RNA dependent ATPase :Q72GF3_THET2 | |
2 | b | M 1 (D) | non-polymer(8OD) | [(2R,3S,4R,5R)-5-(6-azanyl-8-oxo-7H-purin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methyl phosphono hydrogen phosphate | 294P 295S(T) 296R 297E 325G 346T 348G 349R 378Q(M) 380Y(F) (identity: 70.0 %/35.7 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:3nbf_D_1 identity=35.7% |
queryA 4:FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA: 103 :* *** * ** * * ** * * * * *** ** * * * * * : 3nbf_D_1 3:FKDFPLKPEILEALHGRGLTTPTPIEAAALPLALEGKDLIGQAXXXXGKTLAFALPIAERLAPS---QERGRKPRALVLT--------------------: 79 SecStr :GGGS HHHHHHHHTTT HHHHHHHHHHHTT EEEE ---- THHHHHHHHHH --- TT SEEEE --------------------: ExpBur :beebebeeebeebbeeeeeeebeebbeebbeebeeeebbbbbe----ebebbbbbbbbeebeee---eeeebebbbbbbb--------------------: queryA 104:IGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHV: 203 : : 3nbf_D_1 -1:----------------------------------------------------------------------------------------------------: -1 SecStr :----------------------------------------------------------------------------------------------------: ExpBur :----------------------------------------------------------------------------------------------------: queryA 204:KFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTL: 303 : * ** * **** * : 3nbf_D_1 73:-----------------------------------------------------------------------------------PRALVLTPTRELALQVA: 89 SecStr :----------------------------------------------------------------------------------- SEEEE SSHHHHHHHH: ExpBur :-----------------------------------------------------------------------------------bbbbbbbbeeeebeebb: Contact : bbbb queryA 304:NNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQV: 403 : * * ** * * * * ** **** * * * ** * ****** ** * * * : 3nbf_D_1 90:SELTAVA-----PHLKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATP------PSRQT: 178 SecStr :HHHHHH -----TTS EEEE SSS SHHHHHHHHH SEEEE HHHHHHHHHTTSS TT SEEEESSHHHHHHTT HHHHHHHHHHS ------TTSEE: ExpBur :eebeebb-----eebebbebebeeeeeebeebbeebbbbbbbbbebbbebeeeebbebeebebbbbbebbebeeeebeeebbebbeebe------eebbb: Contact : b b bb b b queryA 404:IVCSATLHSFDVKKLSEKIMHFPTWVDL: 431 : **** * * * * * * : 3nbf_D_1 179:LLFSATLPSW-AKRLAERYMKNPVLINV: 205 SecStr :EEE SS HH-HHHHHHHH SS EEEE : ExpBur :bbbbeebeeb-beebbeebbeeeeebee: |