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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(DDX1_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [240 aa] | Probable ATP-dependent RNA helicase DDX52 :DDX52_HUMAN | |
2 | b | D 1 (A) | non-polymer(ADP) | ADENOSINE-5'-DIPHOSPHATE | 296R 324I(K) 349R (identity: 66.7 %/35.6 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:3dkp_A_1 identity=35.6% |
queryA 6:EMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIG: 105 :* * ** ** ** * * * * ****** ***** : 3dkp_A_1 33:EYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPIL--------------------------------------------: 88 SecStr :HH HHHHHHHHHTT S HHHHHHHHHHHTT EEEE TTS HHHHHHHHHH--------------------------------------------: ExpBur :eeebeeebbebbeeeeeeebeebbbbbbbbbbeebbbbbbbeeebebebbbbbbbb--------------------------------------------: queryA 106:SDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKF: 205 : : 3dkp_A_1 -1:----------------------------------------------------------------------------------------------------: -1 SecStr :----------------------------------------------------------------------------------------------------: ExpBur :----------------------------------------------------------------------------------------------------: queryA 206:SKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP------------KALIVE: 293 : *** : 3dkp_A_1 89:----------------------------------------------------------------------------------MQLKQPANKGF-RALIIS: 105 SecStr :----------------------------------------------------------------------------------HHH S SSS - EEEE : ExpBur :----------------------------------------------------------------------------------bebeeeeeebb-bbbbbb: queryA 294:PSRELAEQTLNNIKQFKKYIDNPKLRELLI-IGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGK--LNLSQVRFLVLDEADGLLSQGYSDFINRMHNQ: 390 :* **** * * * * *** ** * ** ** * * * ** ** * * * * : 3dkp_A_1 106:PTRELASQIH---RELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGXXGFRDQLASI: 202 SecStr :SSHHHHHHHH---HHHHHHTTTS EE HHHHHHTTTSTTS EEEE HHHHHHHHHSSS S TT EEEESSHHHHHHH -- HHHHHHHH: ExpBur :eeeeebeebb---eebeebbeebebebebbeeebbeeeebbeeeeeebbbbbbbbeebbebbeeeeebbebeebbbbbbbbbbebbeee--ebeeebeeb: Contact : b bb b queryA 391:IPQVTSDGKRLQVIVCSATLHSFDVKK: 417 : ** * *** ** : 3dkp_A_1 203:FLACTSHKVRRAMF--SATF-AYDVEQ: 226 SecStr :HHH TT EEEEE--ESS - HHHHH: ExpBur :eeebebeebebbbb--bbee-eeebbe: |