Protein Model on 3dkp_A_1_D_1 (TEMPLATE: 3dkp )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(DDX1_HUMAN) A 1 (A) polymer(polypeptide(L)) [240 aa] Probable ATP-dependent RNA helicase DDX52 :DDX52_HUMAN
2 b D 1 (A) non-polymer(ADP) ADENOSINE-5'-DIPHOSPHATE 296R 324I(K) 349R (identity: 66.7 %/35.6 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:3dkp_A_1 identity=35.6%
queryA         6:EMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIG: 105
                :*        *         ** **   **  * *   *  * ****** *****                                              :
3dkp_A_1      33:EYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPIL--------------------------------------------:  88
SecStr          :HH   HHHHHHHHHTT  S  HHHHHHHHHHHTT  EEEE  TTS HHHHHHHHHH--------------------------------------------:    
ExpBur          :eeebeeebbebbeeeeeeebeebbbbbbbbbbeebbbbbbbeeebebebbbbbbbb--------------------------------------------:    

queryA       106:SDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKF: 205
                :                                                                                                    :
3dkp_A_1      -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       206:SKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP------------KALIVE: 293
                :                                                                                               ***  :
3dkp_A_1      89:----------------------------------------------------------------------------------MQLKQPANKGF-RALIIS: 105
SecStr          :----------------------------------------------------------------------------------HHH S  SSS - EEEE :    
ExpBur          :----------------------------------------------------------------------------------bebeeeeeebb-bbbbbb:    

queryA       294:PSRELAEQTLNNIKQFKKYIDNPKLRELLI-IGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGK--LNLSQVRFLVLDEADGLLSQGYSDFINRMHNQ: 390
                :* **** *         *       *   *    ***           ** * ** **  *         *  *  ** ** * *   *   *       :
3dkp_A_1     106:PTRELASQIH---RELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGXXGFRDQLASI: 202
SecStr          :SSHHHHHHHH---HHHHHHTTTS   EE   HHHHHHTTTSTTS     EEEE HHHHHHHHHSSS S   TT  EEEESSHHHHHHH -- HHHHHHHH:    
ExpBur          :eeeeebeebb---eebeebbeebebebebbeeebbeeeebbeeeeeebbbbbbbbeebbebbeeeeebbebeebbbbbbbbbbebbeee--ebeeebeeb:    
Contact         :  b                           bb                        b                                           

queryA       391:IPQVTSDGKRLQVIVCSATLHSFDVKK: 417
                :    **   *      ***    **  :
3dkp_A_1     203:FLACTSHKVRRAMF--SATF-AYDVEQ: 226
SecStr          :HHH   TT EEEEE--ESS - HHHHH:    
ExpBur          :eeebebeebebbbb--bbee-eeebbe:    


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