Protein Model on 3ber_A_1_D_1 (TEMPLATE: 3ber )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(DDX1_HUMAN) A 1 (A) polymer(polypeptide(L)) [220 aa] Probable ATP-dependent RNA helicase DDX47 :DDX47_HUMAN
2 b D 1 (A) non-polymer(PGE) TRIETHYLENE GLYCOL 329A(S) 333L(S) 349R 351D 352D(H) 355S(N) 356T (identity: 42.9 %/39.2 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:3ber_A_1 identity=39.2%
queryA         4:FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA: 103
                :*   **      *     *  ** ** * *** * * *    ***********  *      **                                    :
3ber_A_1      45:FKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLET------------------------------------: 108
SecStr          :TGGGT  HHHHHHHHHTT  S  HHHHHHHHHHHTT  EEEE  TTS HHHHHHHHHHHHHHHS------------------------------------:    
ExpBur          :beebebeeebbebbeeeeeeebebbbbbbbebbeeeebbbbbbeeebebbbbbbbbbbbbbeee------------------------------------:    

queryA       104:IGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHV: 203
                :                                                                                                    :
3ber_A_1      -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       204:KFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPK------ALIVEPSRE: 297
                :                                                                                           **   * **:
3ber_A_1     109:-------------------------------------------------------------------------------------PQRLF-ALVLTPTRE: 122
SecStr          :-------------------------------------------------------------------------------------  SS -EEEE SSHH:    
ExpBur          :-------------------------------------------------------------------------------------eeebb-bbbbbbeee:    

queryA       298:LAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRL-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQ: 393
                :** *      **             * **     *   *     *   ***** * *  *   **     ** ****  *              ** :
3ber_A_1     123:LAFQI---SEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPR: 216
SecStr          :HHHHH---HHHHHHHHGGGT  EEEE TTS HHHHHHHHHT  SEEEE HHHHHHHHHHSTT   TT  EEEE SHHHHHHTT HHHHHHHHHSS S:    
ExpBur          :bbeeb---beebeebbeeeebebbebbeeeeeeebeeebeeebbbbbbbbeebbebeeebeebebeebebbbbbbbbebbeeebeeebeebbeebee:    
Contact         :                               b   b               b  bb  bb                                        


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