Protein Model on 2vso_B_1_D_1
(TEMPLATE: 
2vso
)Protein Model on 2vso_B_1_D_1
(TEMPLATE: 2vso
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(DDX1_HUMAN) | B 1 (B) | polymer(polypeptide(L)) [366 aa] | ATP-DEPENDENT RNA HELICASE EIF4A :IF4A_YEAST | |
| 2 | b | D 1 (F) | polymer(polypeptide(L)) [237 aa] | EUKARYOTIC INITIATION FACTOR 4F SUBUNIT P150 :IF4F1_YEAST | 487E 488A(C) 491I(D) 492L 493K(Y) 494G(D) 495E(S) 496Y(I) 497A(S) 498V 507D(T) 508Q 538H(D) 539Q(K) 540F 541S(T) 563K(S) 564G 565D(S) 567R (identity: 35.0 %/34.7 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:2vso_B_1 identity=34.7% |
queryA 25:PTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCRA: 124
:* ** * * * *** * * **** *** * * * :
2vso_B_1 45:PSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQ----------------------------------------------------: 92
SecStr : HHHHHHHHHHHTT EEEE TTSSHHHHHHHHHHHH TT S ----------------------------------------------------:
ExpBur :beebbbebbbbbbeeebbbbbbeeeeebebbbbbbbbbebeeeeebbb----------------------------------------------------:
queryA 125:TKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKN: 224
: :
2vso_B_1 -1:----------------------------------------------------------------------------------------------------: -1
SecStr :----------------------------------------------------------------------------------------------------:
ExpBur :----------------------------------------------------------------------------------------------------:
queryA 225:QALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLII: 324
: ** ** * **** * * *:
2vso_B_1 90:-------------------------------------------------------------APQALMLAPTRELALQIQKVVMALAFHMD---IKVHACI: 125
SecStr :-------------------------------------------------------------S EEEE SSHHHHHHHHHHHHHHTTTS --- EEEE :
ExpBur :-------------------------------------------------------------bbbbbbbbbeeebbeebbebbeebbeebe---bebebbe:
queryA 325:GGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMH: 424
: * ******** * ***** ** * * * * ** *** ** * * :
2vso_B_1 126:XXXXXXXXXXGLRDA-QIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTT------QVVLLSATMPN-DVLEVTTKFMR: 217
SecStr :---------- SS -SEEEE HHHHHHHHHTT S TT EEEEETHHHHHHTT HHHHHHHHHHS TT ------EEEEEES H-HHHHHHHHH S:
ExpBur :----------ebeeb-bbbbbbbbebeebbeeeebebeebebbbbbbbbebbeeebeeebbebbeebeeeb------bbbbbbbebee-ebeebbeeebe:
queryA 425:FPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ: 524
: * * * * * * * * ** *** * * :
2vso_B_1 218:NPVRILVKKDELTLEGIKQFYVNVEEE-------------------------------EYKYECLTDLYDSISV--------TQAVIFCNTRRKVEELTT: 278
SecStr :S EEEE SSSSEEEEEEEESG-------------------------------GGHHHHHHHHHHHS --------S EEEE SSHHHHHHHHH:
ExpBur :ebbebebeeeeeebeebebbebebeee-------------------------------eebbeebeebeeebeb--------ebbbbbbeeeebbeebbe:
Contact : bb bbbbbbbb bb
queryA 525:YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE: 622
: * * ** * * * ** ** ***** * *** ** * ** ***** * ** * *:
2vso_B_1 279:KL---------RNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRXXXXXXKGVAINFVTNE: 367
SecStr :HH---------HHTT EEEE TTS HHHHHHHHHHHHTTS SEEEE STTSSS S EEEESS SSGGGHHHHS ------ EEEEEEEGG:
ExpBur :eb---------eeeeeebbbbbeebeeeebeebbeebeeeebebbbbbbebbeebeeeebebbbbbbbbeeeebbbebbbe------eeebbbbbbee:
Contact : bbbb bbb b
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[assembly_id:2]
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