Protein Model on 2j0u_A_1_C_1 (TEMPLATE: 2j0u )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(DDX1_HUMAN) A 1 (A) polymer(polypeptide(L)) [366 aa] ATP-DEPENDENT RNA HELICASE DDX48 :DDX48_HUMAN
2 b C 1 (T) polymer(polypeptide(L)) [9 aa] PROTEIN CASC3 :CASC3_HUMAN 361L(T) 385N(Y) 388H(Y) 389N(R) 390Q(Y) 391I(L) 392P 393Q(P) 395T 421K 422I(F) (identity: 27.3 %/33.0 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:2j0u_A_1 identity=33.0%
queryA         3:AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAF: 102
                : *  **                *  **   *  *  * **      * ***  **  * *         *                              :
2j0u_A_1       2:TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVLQCLDIQVRETQ------------------------------:  71
SecStr          : SGGG   HHHHHHHHHTT  S  HHHHHHHHHHHHT  EEEE  SSTTTTHHHHHHHHHH  SSS S  ------------------------------:    
ExpBur          :bbeebebeeebbbbbeeeebeebeeebbebbebbeeeebbbbbeeeeebebbbbbbbbbeebeeeeeebb------------------------------:    

queryA       103:AIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGH: 202
                :                                                                                                    :
2j0u_A_1      -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       203:VKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQT: 302
                :                                                                                      ***  * **** * :
2j0u_A_1      71:-------------------------------------------------------------------------------------QALILAPTRELAVQV:  85
SecStr          :------------------------------------------------------------------------------------- EEEE S HHHHHHH:    
ExpBur          :-------------------------------------------------------------------------------------bbbbbbbebeebeeb:    

queryA       303:LNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQ: 402
                :         *           ***         *  *   * *****  *      *       *******  *  *    *       *  *      *:
2j0u_A_1      86:QKGLLALGDYMN---VQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT------Q: 176
SecStr          :HHHHHHHHTTTT---    EE   S HHHHHHHHHT  SEEEE HHHHHHHHHTS S  TT  EEEETTHHHHHTTT HHHHHHHHHTS TT ------E:    
ExpBur          :eebbeebbeebe---ebbbbbeeeeeeeebeebbeeebbbbbbbbebbbebbeeebbebeebebbbbbebbbbbeeeebeebeebeeebeeeb------b:    
Contact         :                                                          b                       b  bbbbbb b       

queryA       403:VIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIK: 502
                :*   ****          * *  *     *             * *        **                        * *       *         :
2j0u_A_1     177:VVLISATL-PHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAV--------ER------------------------EEW-------KFDTLCDLYD: 236
SecStr          :EEEEES  - HHHHHHHHHH SS EEE SS     STT EEEEEE -------- S------------------------TTS-------HHHHHHHH  :    
ExpBur          :bbbbbeeb-eeebbeebeebbebbbbbbeeeeeebbeebbbebbeb--------eb------------------------eee-------bbebbeeeee:    
Contact         :                  bb                                                                                

queryA       503:EHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHR: 602
                :     ** *** **   * *                 *     ***    **      *  *  * ** *** **  *   *   **  **     * **:
2j0u_A_1     237:XXXITQAVIFCNTKRKVDWLTEKM---------REANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARXXDVPQVSLIINYDLPNNRELYIHR: 327
SecStr          :---   EEEE SSHHHHHHHHHHH---------HHSS  EEEE SSS HHHHHHHHHHHHHTS SEEEE STT  --     SEEEESS  SSHHHHHHH:    
ExpBur          :---eebbbbbbeebebbeebbebb---------eeeebebbebbeebeeeeeeebbebbeeeebebbbbbbebbe--bebeeebbbbbbbbeeeeebbeb:    

queryA       603:IGRVGRAERMGLAISLVATEKEKV: 626
                :*** **  * * *   *      *:
2j0u_A_1     328:IGRSGRYGRKGVAVNFVKNDDIRV: 351
SecStr          :S   SSSS   EEEEEE GGGHHH:    
ExpBur          :beebbeebbeebbbbbbeeebeee:    


Input Residue Numbers for Focused Sites

ex) 2,15,123