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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(DDX1_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [391 aa] | ATP-DEPENDENT RNA HELICASE DDX48 :DDX48_HUMAN | |
2 | b | G 1 (A) | non-polymer(ANP) | PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER | 4F 20M(Y) 22W(F) 24L(K) 25P 26T(S) 29Q 48T(S) 49G 50S(T) 51G 52K 53T 54G(A) 371E 578G 580D 582H(P) 605R 608R 609A(Y) (identity: 57.1 %/34.4 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:2j0s_A_1 identity=34.4% |
queryA 3:AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAF: 102 : * ** * ** * * * ** * *** *** * * : 2j0s_A_1 38:TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQ----------------------------------------: 97 SecStr :SGGGG HHHHHHHHHHT S HHHHHHHHHHHTT EEEE TTSSHHHHHHHHHHH----------------------------------------: ExpBur :ebeebebeeebbebbeeeeeeebbebbbebbebbeeeebbbbbbebbbebebbbbbbbbe----------------------------------------: Contact : b b b bbb b bbbbbbb queryA 103:AIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGH: 202 : : 2j0s_A_1 -1:----------------------------------------------------------------------------------------------------: -1 SecStr :----------------------------------------------------------------------------------------------------: ExpBur :----------------------------------------------------------------------------------------------------: queryA 203:VKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP---------KALIVE: 293 : *** : 2j0s_A_1 98:-------------------------------------------------------------------------------------CLDIQVRETQALILA: 112 SecStr :-------------------------------------------------------------------------------------T TTS S EEEE : ExpBur :-------------------------------------------------------------------------------------ebeeeeeebbbbbbb: queryA 294:PSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQ: 393 :* **** * * *** * * * ***** * * ******* * * * * : 2j0s_A_1 113:PTRELAVQIQKGLLALGDYMN---VQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPP: 209 SecStr :SSHHHHHHHHHHHHHHTTTTT--- EEEE TTS HHHHHHHHHH SEEEE HHHHHHHHHTTSS TT EEEEETHHHHTSTTTHHHHHHHHTTS T: ExpBur :bbebbbebbbebbeebbeebe---bebbbbbbeeeeeebeeebeebbbbbbbbbebbbbbbeeebbebebbebbbbbbbbebbeeebeeebeebeeebee: Contact : b queryA 394:VTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILK: 493 : * ** **** * * * * * * ** * * * : 2j0s_A_1 210:AT------QVVLISATL-PHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAV--------ER------------------------EEWK--FDTLC: 268 SecStr :T ------EEEEEES - HHHHTTGGGT SS EEE GGG S TTEEEEEEEE--------SS------------------------TTHH--HHHHH: ExpBur :eb------bbbbbbbbb-beebbeebeebbeebbebebeeeebeeeebebbbbeb--------ee------------------------eeeb--bebbb: queryA 494:GEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLP: 593 : * * ** *** ** * * * *** ** * * * ** *** *** * * ** **: 2j0s_A_1 269:DLYDTLTIT-----QAVIFCNTKRKVDWLTEKM---------REANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLP: 354 SecStr :HHHHHHTSS-----EEEEE SSHHHHHHHHHHH---------HHTT EEE TTS HHHHHHHHHHHHHTSS EEEE GGGSSS TTEEEEEESS : ExpBur :ebbeebeee-----bbbbbbeeeebbeebbeeb---------eeeeeebbbbbeebebeebeebbeebeeeebebbbbbebbbbbbebeebbbbbbbbbb: Contact : b b b queryA 594:DEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE: 645 : * ***** ** * * ** * * * *: 2j0s_A_1 355:NNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDI-----EQYYSTQIDE: 401 SecStr :SSHHHHHHHHTTSSGGG EEEEEEEEGGGHHHHHHH-----HHHTT EE: ExpBur :eeebbbbbbbbbbbbeeeebbbbbbbeeeeeeebeeb-----beebebebee: Contact : b bb |