CurrentView:HTML5 Change to:[JAVA] |
DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(DDX1_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [382 aa] | Probable ATP-dependent RNA helicase p47 :UAP56_HUMAN | |
2 | b | B 1 (A) | non-polymer(BME) | BETA-MERCAPTOETHANOL | 6E(D) 34P (identity: 50.0 %/34.1 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:1xtk_A_1 identity=34.1% |
queryA 4:FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA: 103 :* ** * * * * ** * *** * * *** * * : 1xtk_A_1 9:FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQ-----------------------------------------: 67 SecStr :GGGG HHHHHHHHHTT HHHHHHHHHHHTT EEEE SSTTHHHHHHHHHHH-----------------------------------------: ExpBur :beebebeeebbebbeebeeeebeebbeebbeebbeeebbbbebeeeeebbbbbbbbbbb-----------------------------------------: Contact : b b queryA 104:IGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHV: 203 : : 1xtk_A_1 -1:----------------------------------------------------------------------------------------------------: -1 SecStr :----------------------------------------------------------------------------------------------------: ExpBur :----------------------------------------------------------------------------------------------------: queryA 204:KFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPK----------ALIVE: 293 : * : 1xtk_A_1 68:-------------------------------------------------------------------------------------QLEPVTGQVSVLVMC: 82 SecStr :-------------------------------------------------------------------------------------H TT EEEE : ExpBur :-------------------------------------------------------------------------------------bbeeeeeebbbbbbb: queryA 294:PSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLE-NGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIP: 392 : **** * * ** * * ** ** * ******** * *** ***** * * * * : 1xtk_A_1 83:HTRELAFQISKEYERFSKYMPNVKVA--VFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDEADKMLEQLD---MRRDVQEIF: 177 SecStr :S HHHHHHHHHHHHHHTTT TT EE--EE TTS HHHHHHHHHHS SEEEE HHHHHHHHHTTSS TT EEEEESHHHHHSSHH---HHHHHHHHH: ExpBur :eeeeebeebbebbebbbeebeebebb--ebbeeeeeeebbeebeeebbbbbbbbbebbbebbeeeebebeebebbbbbbbbebbeeee---bbeebeebb: queryA 393:QVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH-----HVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSE: 487 : * * ** **** * * * * * * * * * * * * ** : 1xtk_A_1 178:RMTPHEK--QVMMFSATL-SKEIRPVCRKFMQDPMEIFVDDETKL--TLHGLQQYYVKLKDNEKNRKLFDLL--------DVL-----------------: 247 SecStr :HTS SSS--EEEEEESS - TTHHHHHHHH SS EEEE -- TT EEEEEE HHHHHHHHHHHH--------HHS-----------------: ExpBur :eebeeeb--bbbbbbeeb-beebeebbeebbeeeeebebeeeeee--ebeebebbbbebeeeebeeebbebb--------eeb-----------------: queryA 488:AIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYV: 587 : * ** * * * * * * ** ** * * * ** ** * : 1xtk_A_1 248:-----------------EFNQVVIFVKSVQRCIALAQLLVEQN---------FPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIA: 321 SecStr :----------------- SEEEEE SSHHHHHHHHHHHHHTT--------- EEEE SSS HHHHHHHHHHTT SS EEEES TT B TTEEEE: ExpBur :-----------------ebebbbbbbeeeeebeebbeebeeee---------bebbbbbeebeeeeebeebeebeeeeeebbbbbeebeebbebeebbbb: queryA 588:INVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE: 624 : * * * ** * ** **** * * : 1xtk_A_1 322:FNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEND: 358 SecStr :EESS SSTTHHHHHS B SSS EEEEEE STTH: ExpBur :bbbbbbeebebbbebbbeeeeebeebbbbbbbbeeeb: |