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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(DDX1_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [206 aa] | ATP-dependent RNA helicase p54 :DDX6_HUMAN | |
2 | b | B 2 (B) | polymer(polypeptide(L)) [206 aa] | ATP-dependent RNA helicase p54 :DDX6_HUMAN | 5S(E) 11P(R) 14A(L) 15Q(M) 18E(F) 19E 312Y(H) (identity: 14.3 %/39.3 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:1vec_A_1 identity=39.3% |
queryA 4:FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA: 103 :* * ** * * ** **** * * * * * * ** ** ** : 1vec_A_1 5:FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLE-----------------------------------------: 63 SecStr :GGGS HHHHHHHHTTT S HHHHHHHHHHHTT EEEE SSSTTHHHHHHHHHH-----------------------------------------: ExpBur :beebebeeebbebbeeeeeeebeebbeebbeebbeeebbbbebeeeeebbbbbbbbbbb-----------------------------------------: Contact : b b bb bb queryA 104:IGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHV: 203 : : 1vec_A_1 -1:----------------------------------------------------------------------------------------------------: -1 SecStr :----------------------------------------------------------------------------------------------------: ExpBur :----------------------------------------------------------------------------------------------------: queryA 204:KFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP---------KALIVEP: 294 : * *: 1vec_A_1 64:------------------------------------------------------------------------------------RLDLKKDNIQAMVIVP: 79 SecStr :------------------------------------------------------------------------------------H TTS S EEEE S: ExpBur :------------------------------------------------------------------------------------ebeeeeeebbbbbbbb: queryA 295:SRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQV: 394 : **** * * * * ** ** * * * **** ** * * ****** **** ** * * : 1vec_A_1 80:TRELALQVSQICIQVSKHMGGAKV--MATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQ---DFVQIMEDIILTL: 174 SecStr : HHHHHHHHHHHHHHTTTSSS E--EEE SSS HHHHHHHTTS SEEEE HHHHHHHHHTT S TT EEEEETHHHHTST---TTHHHHHHHHHHS: ExpBur :eeebbeebbebbeebbeebeebeb--bbbbeeeebeebeeebeeebbbbbbbbebbbebbeeeebebeebebbbbbbbbebbee---eeeeebeebbeeb: Contact : b queryA 395:TSDGKRLQVIVCSAT: 409 : * * ***: 1vec_A_1 175:P---KNRQILLYSAT: 186 SecStr : ---TT EEEEEES : ExpBur :e---eebbbbbbbee: |