#WARNING:no index is registered index "YP_009725310.1" in "https://rest.uniprot.org/uniprotkb/" url "https://rest.uniprot.org/uniprotkb/YP_009725310.1.txt".
Please visit the UniProt website(https://www.uniprot.org), and get a proper ID/AC for your query protein. [pdbjlvh2]Protein Model on 2gth_A_2_A_1

Protein Model on 2gth_A_2_A_1 (TEMPLATE: 2gth )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(queryA) A 2 (A) polymer(polypeptide(L)) [348 aa] Replicase polyprotein 1ab :R1AB_CVMA5
2 b A 1 (A) polymer(polypeptide(L)) [348 aa] Replicase polyprotein 1ab :R1AB_CVMA5 9V(L) 10V 11N 12K(A) 13G 30T(K) 35V(I) 37G(N) 38V(E) 39D 41E(V) 42L(V) 44E(K) 58W(F) 61R 63I 88Y 162L 163N 165V 168I(V) 169G 170E(D) (identity: 47.8 %/49.3 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:2gth_A_2 identity=49.3%
queryA         1:SLENVAFNVVNKGHFDGQQGEVPVSIINNTVYTKVDGVDVELFENKTTLPVNVAFELWAKRNIKPVPEVKILNNLGVDIAANTVIWDYKRDAPAHISTIG: 100
                :*****  * ** *****  ** *   *   *  *    **  * * *  * *** ** *** * * ** *   **  *     * ***  *     **  :
2gth_A_2       2:SLENVVYNLVNAGHFDGRAGELPCAVIGEKVIAKIQNEDVVVFKNNTPFPTNVAVELFAKRSIRPHPELKLFRNLNIDVCWSHVLWDYAKDSVFCSSTYK: 101
SecStr          : HHHHHHHHHHTSS         EEEETTEEEEEETTEEEEEEE  SSS HHHHHHHHHTB  S B  HHHHHHTT  EEBT B EETTTTEESSS BBS:    
ExpBur          :eeebbbebbeeeeeeeeeeeebeeeeeeeebbbeeeeeeeeebebebebebebbbbbbbebbeebbbbbbbbbbbebebbbebbbbbeeeebbbbeebbe:    
Contact         :        bbbbb                b    b bbb bb b             b  b b                        b            

queryA       101:VCSMTDIAKKPTETICAPLTVFFDGRVDGQVDLFRNARNGVLITEGSVKGLQPSVGPKQASLNGVTL--IGEA-VKTQFNYYKKVDGVV-----------: 186
                :**  **            * * ****  *    *   **** *     * *    **  * ****     *   *   *   *  * *            :
2gth_A_2     102:VCKYTDLQ------CIESLNVLFDGRDNGALEAFKKCRNGVYINTTKIKSLSMIKGPQRADLNGVVVEKVGDSDVEFWFAVRKDGDDVIFSRTGSLEPSH: 195
SecStr          :S TTTB S------  SSSEEEEETTSTTHHHHHTT SEEEEEESS  TTS  EE  S EEETTEEESBSSSSB   EEEEEETTEE    SSS SS   :    
ExpBur          :bbeebeee------ebeeebbbbbeebeebeeebeebebbbbbbeeeeeebebbebbebbbeeeeebeeeeeeebebbbbbbeeeeeeeeeeeeeeeeee:    
Contact         :                                                             bb b   bbbb                            

queryA       187:--------------------QQLPETYFTQSRNLQEFKPRSQMEIDFLELAMDEFIERYKLEGYAFEHIVYGDFSHSQLGGLHLLIGLAKRFKESPFELE: 266
                :                         * ***** *  * *** ** **  *  * **  * *  ***** *** *     ********** *   *     :
2gth_A_2     196:XXXXXXXXXXXXXXXXXXXXXXARGTIFTQSRLLSSFTPRSEMEKDFMDLDDDVFIAKYSLQDYAFEHVVYGSFNQKIIGGLHLLIGLARRQQKSNLVIQ: 295
SecStr          :----------------------  S B      GGG    SHHHHHHHHS HHHHHHHTT TTS HHHHHH B SSSB B   BHHHHHHHHTTS EEEE:    
ExpBur          :----------------------eebebbbbbbebeebeeebebbebbbeeeeeebbeeeebeeeebeebbbbebeeeebbbbbbbbbbbebeeebebeee:    

queryA       267:DFIPMDSTVKNYFITDAQTGSSKCVCSVIDLLLDDFVEIIKSQDLSVVSKVVKVTIDYTEISFMLWCKDGHVETF: 341
                : *   **    *****   **** ** ********** * **  *  ***** *  *     *****    * **:
2gth_A_2     296:EFVTYDSSIHSYFITDENSGSSKSVCTVIDLLLDDFVDIVKSLNLKCVSKVVNVNVDFKDFQFMLWCNEEKVMTF: 370
SecStr          : SS S  SEEEEEEEETTT  EEEEEEEE   HHHHHHHHHH    SSSEEEEEEETTEEEEEEE SS EEE   :    
ExpBur          :eeeeebbbbbebebebeeeebebeebbbbbbbbeebbebbeebeeeeeeeebebbbbbebbebbbeeeebebeee:    


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