[pdbjlvh2]Protein Model on 6vvu_A_1_H

Protein Model on 6vvu_A_1_H_1 (TEMPLATE: 6vvu )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(TMPS2_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [243 aa]	Tryptase alpha/beta-1 :TRYB1_HUMAN
2	b		H 1 (H)	polymer(polypeptide(L)) [216 aa]	Fab E104.v1 heavy chain	304N(D) 308W(L) 309T(A) 312A(R) 324A(Q) 325G(L) 326Y(L) 327Q(P) 328V 329E(S) 352Q(E) 353K(E) (identity: 8.3 %/40.3 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:6vvu_A_1 identity=40.3%

queryA       256:IVGGESALPGAWPWQVSLHVQN---VHVCGGSIITPEWIVTAAHCVEKPLNNPWHWTAFAGILRQSFMFY-GAGYQVEKVISHPNYDSKTKNNDIALMKL: 351
                :****  *    ******* *      * **** * * *  ******           *    **     *      *   * **         ****  *:
6vvu_A_1      31:IVGGQEAPRSKWPWQVSLRVHGPYWMHFCGGSLIHPQWVLTAAHCVGPDVKD---LAALRVQLREQHLYYQDQLLPVSRIIVHPQFYTAQIGADIALLEL: 127
SecStr          : BS EE  SSS TTEEEEEE SSS EEEEEEEEEETTEEEE HHHH SS   ---GGGEEEE S SBTTTT   EEEEEEEE TT S TTTS   EEEEE:    
ExpBur          :bbeeeebeeeebbbbbbbbeeeeeeebebbbbbbeeebbbbbbebbbeeeee---eebbebbbbebebeeeeeebebeeebebeebeebeebbbbbbbeb:    
Contact         :                        b                          b   bb  b            bbbbbb                      

queryA       352:QKPLTFNDLVKPVCLPNPGMMLQPEQLCWISGWGATE--EKGKTSEVLNAAKVLLIETQRCNSRYVYD-------NLITPAMICAGFLQGNVDSCQGDSG: 442
                :  *      *  * **       *   **  ***     *       *   **   *   *   *                * ***      ********:
6vvu_A_1     128:EEPVNVSSHVHTVTLPPASETFPPGMPCWVTGWGDVDNDERLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIVRDDMLCAG--NTRRDSCQGDSG: 225
SecStr          :SS     SSS   B   TT    TT  EEEEESS SBTTB   TT B EEEEE EE HHHHHHHHHTT  S TTS SS TTEEEE -- SSSB  TT TT:    
ExpBur          :eeebeeeeebeebebbeeebebeeebebbbbbbbbbeeeeebeeeebbbbbebebeebeebbeebbeeeeeeeeeebbeebbbbbb--eeeebbbebbbb:    
Contact         :bb                                                                                                  

queryA       443:GPLVTSKNNIWWLIGDTSWGSGCAKAYRPGVYGNVMVFTDWIYR: 486
                :****   *  *   *  *** ***   *** *  *    ***  :
6vvu_A_1     226:GPLVCKVNGTWLQAGVVSWGEGCAQPNRPGIYTRVTYYLDWIHH: 269
SecStr          : EEEEEETTEEEEEEEEEE SSSSBTTB EEEEEGGGGHHHHHH:    
ExpBur          :bbbbbebeeeebbbbbbbbeeebbeeebbbbbbbbbebbebbee:

Protein Model on 6vvu_A_1_H_1 (TEMPLATE: 6vvu )

Input Residue Numbers for Focused Sites