Protein Model on 6d3x_B_1_D_1 (TEMPLATE: 6d3x )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:2]

Window size :
[small] [medium] [large]

[help]


MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(TMPS2_HUMAN) B 1 (B) polymer(polypeptide(L)) [244 aa] Plasminogen :PLMN_HUMAN
2 b D 1 (D) polymer(polypeptide(L)) [14 aa] Trypsin inhibitor 1 :SFTI1_HELAN 278V(M) 280V(F) 281C 296H 345D 419L(R) 435D 436S 437C 438Q 439G 440D 441S 460S 461W 462G 463S(L) 472G (identity: 77.8 %/40.1 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:6d3x_B_1 identity=40.1%
queryA       256:IVGGESALPGAWPWQVSLHVQ-NVHVCGGSIITPEWIVTAAHCVEKPLNNPWHWTAFAGILRQSFMFYGAGYQVEKVISHPNYDSKTKNNDIALMKLQKP: 354
                : ***  * *  *******      * ***  * ***  ***** **                           *      *         **** **  *:
6d3x_B_1      17:VVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCLEKSPRPSSYKVILGAHQEVNLEPHVQEIEVSRLFLEPT------RKDIALLKLSSP: 110
SecStr          : BSSEE  TTSSTTEEEEE TT  EEEEEEEEETTEEEE GGGGTT   GGG EEEES  BSSS  TT EEEEEEEEEE TT------  S EEEEESS :    
ExpBur          :bbbebbbeebbbbbbbbbbeeeeebbbbbbbbbeebbbbbbebbeebeeeeebebbbbbbeeeeeeeebbebebeebbebee------eeebbbbbbeee:    
Contact         :                       b bb              b                                                b         

queryA       355:LTFNDLVKPVCLPNPGMMLQPEQLCWISGWGATEEKGKTSEVLNAAKVLLIETQRCNSRYVYDNLITPAMICAGFLQGNVDSCQGDSGGPLVTSKNNIWW: 454
                :    * * * *** *         * * *** *         *  *    **   **              *** * *  ************        :
6d3x_B_1     111:AVITDKVIPACLPSPNYVVADRTECFITGWGETQGTFGAG-LLKEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQGDSGGPLVCFEKDKYI: 209
SecStr          :   BTTB   B   TT    TT EEEEEES   TT S TT-B EEEEEEEE HHHHTSTTTTTT   TTEEEES TT S B  TT TT EEEEEETTEEE:    
ExpBur          :beeeeebbbbbebeeeeebeeeeebbbbbbbebeeeebee-ebbbbebbbbebebbeeeebbeeebeebbbbbbeeeeebbbbeebbbbbbbbeeeeebb:    
Contact         :                                                                b               bbbbbbb             

queryA       455:LIGDTSWGSGCAKAYRPGVYGNVMVFTDWIYRQMR: 489
                :* * **** ***    ****  *  *  **   **:
6d3x_B_1     210:LQGVTSWGLGCARPNKPGVYVRVSRFVTWIEGVMR: 244
SecStr          :EEEEEEE SSSS TT  EEEEEGGGGHHHHHHHHH:    
ExpBur          :bbbbbbeeeebbeeeebbbbbbbbebbeebeebbe:    
Contact         :     bbbb        b                                                                                  


Input Residue Numbers for Focused Sites

ex) 2,15,123