Protein Model on 4mpu_B_1_F_1 (TEMPLATE: 4mpu )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1] [assembly_id:2]

Window size :
[small] [medium] [large]

[help]


MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(TMPS2_HUMAN) B 1 (B) polymer(polypeptide(L)) [243 aa] Tryptase alpha/beta-1 :TRYB1_HUMAN
2 b F 1 (B) non-polymer(X2A) (6S,8R)-N,N'-bis[3-({4-[3-(aminomethyl)phenyl]piperidin-1-yl}carbonyl)phenyl]-8-hydroxy-6-(1-hydroxycyclobutyl)-5,7-dioxaspiro[3.4]octane-6,8-dicarboxamide 338D(Y) 341T(Q) 435D 436S 437C 438Q 441S 459T(V) 461W 462G 463S(E) 464G 465C 472G (identity: 71.4 %/40.3 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:4mpu_B_1 identity=40.3%
queryA       256:IVGGESALPGAWPWQVSLHVQN---VHVCGGSIITPEWIVTAAHCVEKPLNNPWHWTAFAGILRQSFMFY-GAGYQVEKVISHPNYDSKTKNNDIALMKL: 351
                :****  *    ******* *      * **** * * *  ******           *    **     *      *   * **         ****  *:
4mpu_B_1       1:IVGGQEAPRSKWPWQVSLRVHGPYWMHFCGGSLIHPQWVLTAAHCVGPDVKD---LAALRVQLREQHLYYQDQLLPVSRIIVHPQFYTAQIGADIALLEL:  97
SecStr          : BS EE  TTS TTEEEEEE SSS EEEEEEEEEETTEEEE HHHH SS   ---GGGEEEE   SBTTTT   EEEEEEEE TT S TTTS   EEEEE:    
ExpBur          :bbeeeebeeeebbbbbbbbeeeeeeebebbbbbbeeebbbbbbebbbeeeee---eeebebbbbbbebeeeeeeeebeeebebeebeebeebbbbbbbeb:    
Contact         :                                                                                      b  b          

queryA       352:QKPLTFNDLVKPVCLPNPGMMLQPEQLCWISGWGATE--EKGKTSEVLNAAKVLLIETQRCNSRYVYD-------NLITPAMICAGFLQGNVDSCQGDSG: 442
                :  *      *  * **       *   **  ***     *       *   **   *   *   *                * ***      ********:
4mpu_B_1      98:EEPVKVSSHVHTVTLPPASETFPPGMPCWVTGWGDVDNDERLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIVRDDMLCAG--NTRRDSCQGDSG: 195
SecStr          :SS     SSS   B   TT    TT EEEEEES  SBTTB   TT B EEEEEEEE HHHHHHHHHTT  S TTS SS TTEEEE -- SSSB  TT TT:    
ExpBur          :eeebeeeeebeebebbeeeeebeeebebebbbbbbbeeeeebeeeebbbbbebebbebeebbeebbeeeeeeeeeebbeebbbbbb--eeeebbbeebbb:    
Contact         :                                                                                            bbbb  b 

queryA       443:GPLVTSKNNIWWLIGDTSWGSGCAKAYRPGVYGNVMVFTDWIYR: 486
                :****   *  *   *  *** ***   *** *  *    ***  :
4mpu_B_1     196:GPLVCKVNGTWLQAGVVSWGEGCAQPNRPGIYTRVTYYLDWIHH: 239
SecStr          : EEEEEETTEEEEEEEEEE SSSSBTTB EEEEETGGGHHHHHT:    
ExpBur          :bbbbbebeeeebbbbbbbbeeebbeeebbbbbbebbebbebbee:    
Contact         :                b bbbbb      b                                                                      


Input Residue Numbers for Focused Sites

ex) 2,15,123