Protein Model on 3vpk_A_1_D_1 (TEMPLATE: 3vpk )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(TMPS2_HUMAN) A 1 (A) polymer(polypeptide(L)) [223 aa] Cationic trypsin :TRY1_BOVIN
2 b D 1 (A) non-polymer(E4B) ethyl 4-hydroxybenzoate 340K(N) 341T 342K(L) 419L(Q) 461W (identity: 40.0 %/41.0 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:3vpk_A_1 identity=41.0%
queryA       256:IVGGESALPGAWPWQVSLHVQNVHVCGGSIITPEWIVTAAHCVEKPLNNPWHWTAFAGILRQSFMFYGAGYQVEKVISHPNYDSKTKNNDIALMKLQKPL: 355
                :****        * ****     * **** *   * * ****                       *  *     * * ** * * * **** * **    :
3vpk_A_1       1:IVGGYTCGANTVPYQVSLN-SGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNI-NVVEGNEQFISA----SKSIVHPSYNSNTLNNDIMLIKLKSAA:  94
SecStr          : BS EE  TTSSTTEEEEE-SSSEEEEEEEEETTEEEE GGG  SS EEEES SST-TS  SS EEEEE----EEEEE TT  TTT TT  EEEEESS  :    
ExpBur          :bbeeeebeebebebbbbbb-eeebbbbbbbbeeebbbbbbebeeeebebbbbbbbb-eeeeeebbebee----eeeeebeeeeeeebebbbbbbbbeeeb:    
Contact         :                                                                                    bbb             

queryA       356:TFNDLVKPVCLPNPGMMLQPEQLCWISGWGATEEKGKT-SEVLNAAKVLLIETQRCNSRYVYDNLITPAMICAGFLQGNVDSCQGDSGGPLVTSKNNIWW: 454
                :  *  *    **           * ***** *   *     **   *        * *   *   **  * *** * *  ********** * *      :
3vpk_A_1      95:SLNSRVASISLPTSCASAGTQ--CLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKS--AYPGQITSNMFCAGYLEGGKDSCQGDSGGPVVCSGK----: 186
SecStr          :  BTTB   B  SS   TT E--EEEEES    SSS    SS EEEEEEB  HHHHHH--HSTTT  TTEEEES TTSS B  TT TT EEEETTE----:    
ExpBur          :eeeeebeebebbeeeeeeeee--bbbbbbbbeeeeeeeebeebebbebebbeeeebee--bbeeebeebbbbbbbeeeeebbbebbbbbbbbbeee----:    
Contact         :                                                                b                                   

queryA       455:LIGDTSWGSGCAKAYRPGVYGNVMVFTDWIYRQMRAD: 491
                :* *  *******    ****  *     **       :
3vpk_A_1     187:LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIASN: 223
SecStr          :EEEEEEE SSSS TT  EEEEEGGGGHHHHHHHHHT :    
ExpBur          :bbbbbbbeeebbeeeebbbbbebbebbeebeebbeee:    
Contact         :      b                                                                                             


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