Protein Model on 2xtt_B_1_A_1 (TEMPLATE: 2xtt )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]


MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(TMPS2_HUMAN) B 1 (B) polymer(polypeptide(L)) [223 aa] CATIONIC TRYPSIN :TRY1_BOVIN
2 b A 1 (A) polymer(polypeptide(L)) [35 aa] PROTEASE INHIBITOR SGPI-1 :SGP1_SCHGR 278V(Y) 280V(F) 281C 296H 342K(L) 415V(A) 417D(P) 435D 436S 437C 438Q 439G 440D 441S 460S 461W 462G 463S 464G 465C 470R(K) 472G (identity: 72.7 %/41.0 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:2xtt_B_1 identity=41.0%
queryA       256:IVGGESALPGAWPWQVSLHVQNVHVCGGSIITPEWIVTAAHCVEKPLNNPWHWTAFAGILRQSFMFYGAGYQVEKVISHPNYDSKTKNNDIALMKLQKPL: 355
                :****        * ****     * **** *   * * ****                       *  *     * * ** * * * **** * **    :
2xtt_B_1       1:IVGGYTCGANTVPYQVSLN-SGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNI-NVVEGNEQFISA----SKSIVHPSYNSNTLNNDIMLIKLKSAA:  94
SecStr          : BS EE  TTSSTTEEEEE-SSSEEEEEEEEETTEEEE GGG  TT EEEES SST-TS  S  EEEEE----EEEEE TT  TTT TT  EEEEESS  :    
ExpBur          :bbeeeebeebebebbbbbb-eeeebbbbbbbeeebbbbbbebeeeebebebbbbbb-eeeeebbbebee----eebeebeebeeeeeebbbbbbbbeeeb:    
Contact         :                      b bb              b                                             b             

queryA       356:TFNDLVKPVCLPNPGMMLQPEQLCWISGWGATEEKGKT-SEVLNAAKVLLIETQRCNSRYVYDNLITPAMICAGFLQGNVDSCQGDSGGPLVTSKNNIWW: 454
                :  *  *    **           * ***** *   *     **   *        * *   *   **  * *** * *  ********** * *      :
2xtt_B_1      95:SLNSRVASISLPTSCASAGTQ--CLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKS--AYPGQITSNMFCAGYLEGGKDSCQGDSGGPVVCSGK----: 186
SecStr          :  BTTB   B  SS   TT E--EEEEESS   SSS    SS EEEEEEB  HHHHHH--HSTTT  TTEEEES TT S B  TT TT EEEETTE----:    
ExpBur          :eeeeebeebebbeeeeeeeee--bbbbbbbbeeeeeeeebeebbbbebebbeeebbee--bbeeebeebbbbbbeeeeeebbbeebbbbbbbbeee----:    
Contact         :                                                            b b                 bbbbbbb             

queryA       455:LIGDTSWGSGCAKAYRPGVYGNVMVFTDWIYRQMRAD: 491
                :* *  *******    ****  *     **       :
2xtt_B_1     187:LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIASN: 223
SecStr          :EEEEEEE SSSSBTTB EEEEEGGGGHHHHHHHHHH :    
ExpBur          :bbbbbbbeeebbeeeebbbbbebbebeebbeebeeee:    
Contact         :     bbbbbb    b b                                                                                  


Input Residue Numbers for Focused Sites

ex) 2,15,123