Protein Model on 1y5u_A_1_E_1 (TEMPLATE: 1y5u )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(TMPS2_HUMAN) A 1 (T) polymer(polypeptide(L)) [223 aa] Trypsin, cationic :TRY1_BOVIN
2 b E 1 (T) non-polymer(TL4) 2-O-{3-[AMINO(IMINO)METHYL]PHENYL}-5-O-{4-[AMINO(IMINO)METHYL]PHENYL}-1,4:3,6-DIANHYDRO-D-GLUCITOL 340K(E) 341T 342K(Y) 419L(Q) 435D 436S 437C 441S 459T(V) 460S 461W 462G 464G 465C 472G (identity: 73.3 %/41.0 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:1y5u_A_1 identity=41.0%
queryA       256:IVGGESALPGAWPWQVSLHVQNVHVCGGSIITPEWIVTAAHCVEKPLNNPWHWTAFAGILRQSFMFYGAGYQVEKVISHPNYDSKTKNNDIALMKLQKPL: 355
                :****        * ****     * **** *   * * ****                       *  *     * * ** * * * **** * **    :
1y5u_A_1       1:IVGGYTCGANTVPYQVSLN-SGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNI-NVVEGNEQFISA----SKSIVHPSYNSETYNNDIMLIKLKSAA:  94
SecStr          : BS EE  TTSSTTEEEEE-SSSEEEEEEEEETTEEEE GGG  SS EEEES SST-TS  S  EEEEE----EEEEE TT BTTTTBT  EEEEESS  :    
ExpBur          :bbeeeebeebebebbbbbb-eeebbbbbbbbeeebbbbbbebeeeebebbbbbbbb-eeeeeebeebee----eeeeebeeeeeeeeebbbbbbbbeeeb:    
Contact         :                                                                                    bbb             

queryA       356:TFNDLVKPVCLPNPGMMLQPEQLCWISGWGATEEKGKT-SEVLNAAKVLLIETQRCNSRYVYDNLITPAMICAGFLQGNVDSCQGDSGGPLVTSKNNIWW: 454
                :  *  *    **           * ***** *   *     **   *        * *   *   **  * *** * *  ********** * *      :
1y5u_A_1      95:SLNSRVASISLPTSCASAGTQ--CLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKS--AYPGQITSNMFCAGYLEGGKDSCQGDSGGPVVCSGK----: 186
SecStr          :  BTTB   B  SS   TT E--EEEEESS   SSS    SS EEEEEEB  HHHHHH--HSTTT  TTEEEES TT S B  TT TT EEEETTE----:    
ExpBur          :eeeeebeebebbeeeeeeeee--bebbbbbbebeeeeeebeebebbebbbbeeebbee--ebeeebeebbbbbbeeeeeebbbebbbbbbbbbeee----:    
Contact         :                                                                b               bbb   b             

queryA       455:LIGDTSWGSGCAKAYRPGVYGNVMVFTDWIYRQMRAD: 491
                :* *  *******    ****  *     **       :
1y5u_A_1     187:LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIASN: 223
SecStr          :EEEEEEE SSSSBTTB EEEEEGGGGHHHHHHHHHT :    
ExpBur          :bbbbbbbeeebbeeeebbbbbebbebbebbeebbeee:    
Contact         :    bbbb bb      b                                                                                  


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