[pdbjlvh2]Protein Model on 1ygs_A_3_A

Protein Model on 1ygs_A_3_A_1 (TEMPLATE: 1ygs )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(SMAD3_HUMAN)	A 3 (A)	polymer(polypeptide(L)) [190 aa]	SMAD4 :SMA4_HUMAN
2	b		A 1 (A)	polymer(polypeptide(L)) [190 aa]	SMAD4 :SMA4_HUMAN	241N(D) 249H(K) 363V 364Y(D) 367T(R) 390T(K) 397E 399H 404L 405Q 407L 408D 412T(H) (identity: 53.8 %/48.9 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:1ygs_A_3 identity=48.9%

queryA       229:PAFWCSISYYELNQRVGETFH--ASQPSMTVDGFTDPSNSERFCLGLLSNVNRNAAVELTRRHIGRGVRLYYIG-GEVFAECLSDSAIFVQSPNCNQRYG: 325
                :*  **** * *    *****    * *  ****  ***   ***** **** *  * *  * *** ** *   * * *   **** * ****       *:
1ygs_A_3       2:PEYWCSIAYFEMDVQVGETFKVPSSCPIVTVDGYVDPSGGDRFCLGQLSNVHRTEAIERARLHIGKGVQLECKGEGDVWVRCLSDHAVFVQSYYLDREAG: 101
SecStr          : SEEEEEEEEETTEEEEEEEEEETT SEEEEESS  TT SSEEE TT   TT  HHHHHHHTTTTT EEEEEETTTEEEEEE SSS EEEE HHHHHTTT:    
ExpBur          :eeebbbbbbbbeeeebeeebebeeebeebbbbeeeeeeeeeebbbeebebeeeeeebeebbeebeebbebbbeeebebebebebeebbbbbbebbbeeee:    
Contact         :            b       b                                                                               

queryA       326:WHPA-TVCKIPPGCNLKIFNNQE----------------------------------FAALLAQSVNQGFEAVYQLTRMCTIRMSFVKGWGAEYRRQTVT: 390
                :  *   * ** *    * *                                                     *  * * *  *********  * **   :
1ygs_A_3     102:RAPGDAVHKIYPSAYIKVFDLRQCHRQMQQQAATAQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDDLRRLCILRMSFVKGWGPDYPRQSIK: 201
SecStr          :  TT   EEE TT EEEEE HHHHHHHHHHHHHHHT ----------------------------------- HHHHHTTEEEEESS   STTSS SSGG:    
ExpBur          :eeeeebebebeeeeeeebbbbebbeeebeeebeeeee-----------------------------------eeebeebbbbebbbbebbbeeeeeebbe:    
Contact         :                                                                        bb  b                      b

queryA       391:STPCWIELHLNGPLQWLDKVLTQM: 414
                : ****** **   ** ** **  *:
1ygs_A_3     202:ETPCWIEIHLHRALQLLDEVLHTM: 225
SecStr          :GSSSEEEEEEHHHHHHHHHHHHT :    
ExpBur          :ebbbbbbbebebbeebbeebeeee:    
Contact         :      b b    bb bb   b

Protein Model on 1ygs_A_3_A_1 (TEMPLATE: 1ygs )

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