[pdbjlvh2]Protein Model on 5ypr_A

Protein Model on 5ypr_A_1 (TEMPLATE: 5ypr )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description
1	a	A(PALS1_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [267 aa]	Disks large homolog 4 :DLG4_RAT

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:5ypr_A_1 identity=35.9%

queryA       348:IHVKAHFDYDPSDDPYVPCREL--GLSFQKGDILHVISQEDPNWWQAYREGDEDNQPLAGLVPGKSFQQQREAMKQTIEEDKEPEKSGKLWCAKKNKKKR: 445
                :    * ****   *    *  *   ***  ** ****   *  **** *          *  * *     **                            :
5ypr_A_1      28:FYIRALFDYDKTKD----CGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHXXXXXXDIGFIPSKRRVERREXXXXXXXXXXXXXXXXXX----------: 113
SecStr          : EEEESS B HHHH----H SSSS   B TT EEEEEE  SSSEEEEEE  ------ EEEEE HHHHHHH ----------------------------:    
ExpBur          :eebbbbeebeeeee----eeeeeebbebbbeebbebeeeeeeeebbbbbee------eeeebbbeebbeeee----------------------------:    

queryA       446:KKVLYNANKNDDYDNEEILTYEEMSLYHQPANRKRPIILIGPQNCGQNELRQRLMNKEKDRFASAVPHTTRSRRDQEVAGRDYHFVS-RQAFEADIAAGK: 544
                :                  * **            ****  **     *     *     * * * ******  *  *  ******** *   * ** * *:
5ypr_A_1     114:--------------XXSVLSYETVT--QMEVHYARPIIILGPTKDRAND---DLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIQAHK: 194
SecStr          :----------------    EEEEE--EEE SS   EEEESTTHHHHHH---HHHHH TTTEE    EE S   SS  BTTTBEE S HHHHHHHHHTT :    
ExpBur          :----------------eeebbbebe--eeebebbbbbbbbbbbbeebbe---ebeeeeeeebbebbeebbbeeeeebeeeeeeebbeeeeebeebeeeee:    

queryA       545:FIEHGEFEKNLYGTSIDSVRQVINSGKICLLSLRTQSLKTLRNSDLKPYIIFIAPPSQERLRALLAKEGKNPKPEELREIIEKTREMEQNNGHYFDTAIV: 644
                :*** *     *****  *** *   ** * *         *    * *  *** * * *          *    *  *         **     *     :
5ypr_A_1     195:FIEAGQYNSHLYGTSVQSVREVAEQGKHCILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLEI----NKRITEEQARKAFDRATKLEQEFTECFSAIVE: 290
SecStr          :EEEEEEETTEEEEEEHHHHHHHHTTT EEB    THHHHHHHHTT   EEEEE  SSHHHHHHH---- SSS HHHHHHHHHHHHHHHHHHGGG SEEE :    
ExpBur          :bbeeeeeeeebbbbbbebbeebbeeeebbbbebebebbeebeeeebbbbbbbbbbeebebbeeb----eeeeeeeebeeeeeebeeeeeebbebbbbbbe:    

queryA       645:NSDLDKAYQELLRLINKLDTEPQWVPS: 671
                :       *    * *  *     *** :
5ypr_A_1     291:GDSFEEIYHKVKRVIEDLSGPYIWVPA: 317
SecStr          : SSHHHHHHHHHHHHHHH SSEEEEE :    
ExpBur          :beebeebbeebebbbeeeeeeebebee:

Protein Model on 5ypr_A_1 (TEMPLATE: 5ypr )

Input Residue Numbers for Focused Sites