Protein Model on 6tce_A_1_B_1 (TEMPLATE: 6tce )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]


MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(SMAD3_HUMAN) A 1 (A) polymer(polypeptide(L)) [123 aa] Mothers against decapentaplegic homolog 5 :SMAD5_HUMAN
2 b B 1 (B) polymer(polydeoxyribonucleotide) [16 base] DNA (5'-D(P*TP*GP*CP*AP*GP*GP*CP*TP*AP*GP*CP*CP*TP*GP*CP*A)-3') 37S(A) 70S 71L 74R 76Q 78S 81K (identity: 85.7 %/69.0 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:6tce_A_1 identity=69.0%
queryA        10:PIVKRLLGWKKGEQN-GQEEKWCEKAVKSLVKKLKKT-GQLDELEKAITTQNVNTKCITIPRSLDGRLQVSHRKGLPHVIYCRLWRWPDLHSHHELRAME: 107
                :* ********        **** ****  *******  *   *****        ** ************************* ****** *****    :
6tce_A_1       5:PAVKRLLGWKXXXXXXDEEEKWAEKAVDALVKKLKKKKGAMEELEKALSSPGQPSKCVTIPRSLDGRLQVSHRKGLPHVIYCRVWRWPDLQSHHELKPLD: 104
SecStr          :HHHHHHHT  ------ HHHHHHHHHHHHHHHHHHSSTTSHHHHHHHHSS SS     EEE  SSS EEETTEEE HHHHHHHHHT TT   GGGEEE S:    
ExpBur          :ebbeebbeee------eeeeebbeebbeebbeebeeeeebbeebeebbeeeeeeeebbbbebeeebebebeeeeebbbbbbbebbeeeebeeeebbeeee:    
Contact         :                            b                                 bb  b b b  b                          

queryA       108:LCEFAFNMKKDEVCVNPYHYQRVETPVL: 135
                : *** *  *  *** ***** *** ***:
6tce_A_1     105:ICEFPFGSKQKEVCINPYHYKRVESPVL: 132
SecStr          :S SS SSS  SEEE  TTSEEE      :    
ExpBur          :ebeebeeeeeeebbbbbebbeeeeeeee:    


Input Residue Numbers for Focused Sites

ex) 2,15,123