Protein Model on 5odg_B_2_D_1 (TEMPLATE: 5odg )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]


MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(SMAD3_HUMAN) B 2 (B) polymer(polypeptide(L)) [125 aa] Mothers against decapentaplegic homolog 3 :SMAD3_HUMAN
2 b D 1 (E) polymer(polydeoxyribonucleotide) [13 base] DNA (5'-D(P*CP*AP*GP*GP*CP*TP*AP*GP*CP*CP*TP*GP*CP*A)-3') 33K 37S 41K 70S 71L 74R 75L 76Q 77V 78S 81K (identity: 100.0 %/100.0 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:5odg_B_2 identity=100.0%
queryA        11:IVKRLLGWKKGEQNGQEEKWCEKAVKSLVKKLKKTGQLDELEKAITTQNVNTKCITIPRSLDGRLQVSHRKGLPHVIYCRLWRWPDLHSHHELRAMELCE: 110
                :****************************************************************************************************:
5odg_B_2       4:IVKRLLGWKKGEQNGQEEKWCEKAVKSLVKKLKKTGQLDELEKAITTQNVNTKCITIPRSLDGRLQVSHRKGLPHVIYCRLWRWPDLHSHHELRAMELCE: 103
SecStr          :HHHHHHTT  S   HHHHHHHHHHHHHHHHHHHHHT HHHHHHHHHH  SSS   EEE  TTS EEETTEEE HHHHHHHHHT TT   GGGEEE TT T:    
ExpBur          :bbeebbeeeeeeeeeeeeebbeebbeebbeebeeeebbebbeebbeeeeeebebbbbeeeeebebebeeeeebbbbbbbebbebeebeeeeebbeeeebe:    
Contact         :                      b   b   b                            bb  bbbbb  b                             

queryA       111:FAFNMKKDEVCVNPYHYQRVETPV: 134
                :************************:
5odg_B_2     104:FAFNMKKDEVCVNPYHYQRVETPV: 127
SecStr          :T GGG  SEEE  GGGEEE     :    
ExpBur          :ebbeeeeeebbbbbbbbeeeeeee:    


Input Residue Numbers for Focused Sites

ex) 2,15,123