Protein Model on 1g88_B_1_A_1 (TEMPLATE: 1g88 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(SMAD3_HUMAN) B 1 (B) polymer(polypeptide(L)) [242 aa] SMAD4 :SMAD4_HUMAN
2 b A 1 (A) polymer(polypeptide(L)) [221 aa] SMAD4 :SMAD4_HUMAN 241N(D) 246E 247T 357N(A) 358Q(A) 359G 360F(I) 363V 364Y(D) 367T(R) 371T(I) 390T(K) 397E 399H 401N(H) 404L 405Q 407L 408D 411L 412T(H) (identity: 52.4 %/50.3 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:1g88_B_1 identity=50.3%
queryA       229:PAFWCSISYYELNQRVGETFH--ASQPSMTVDGFTDPSNSERFCLGLLSNVNRNAAVELTRRHIGRGVRLYYIG-GEVFAECLSDSAIFVQSPNCNQRYG: 325
                :*  **** * *    *****    * *  ****  ***   ***** **** *  * *  * *** ** *   * * *   **** * ****       *:
1g88_B_1      36:PEYWCSIAYFEMDVQVGETFKVPSSCPIVTVDGYVDPSGGDRFCLGQLSNVHRTEAIERARLHIGKGVQLECKGEGDVWVRCLSDHAVFVQSYYLDREAG: 135
SecStr          : SEEEEEEEEETTEE S  EEEETT SEEEEESS     SSEEE TT   TT  HHHHHHHHHHTT EEEEEETTTEEEEEE SSS EEEE HHHHHHTT:    
ExpBur          :beebbbbbbbbeeeebeeebebeeebeebbbbeeeeeeeeeebbbeebebeeeeeebeebbeebeebbebbbeeebbbebebebeebbbbbbebbbeeee:    
Contact         :            b    bb                                                                                 

queryA       326:WHPA-TVCKIPPGCNLKIFNNQE-----------------------------------FAALLAQSVNQGFEAVYQLTRMCTIRMSFVKGWGAEYRRQTV: 389
                :  *   * ** *    * *                                        *     *   *   *  * * *  *********  *  *  :
1g88_B_1     136:RAPGDAVHKIYPSAYIKVFDLRQCHRQMQQQAATAQAAAAAQAAAVAXXXXXXXXXXXXAPAISLSAAAGI-GVDDLRRLCILRMSFVKGWGPDYPSQSI: 234
SecStr          :  TT  EEEE TT EEEEE HHHHHHHHHHHHHHHHHHHHHHHHHH ------------     B   TTT-THHHHGGGGEEEEESS   STTSS  SG:    
ExpBur          :eeeeebbbbbeeebebebbbbebbbeebeeebeebeeebeeebeeee------------eeeeeeeeeeee-eeeebeebbbbebbbbebbbeeeebeeb:    
Contact         :                                                                   bbbb  bb  b   b                  

queryA       390:TSTPCWIELHLNGPLQWLDKVLTQM: 414
                :  ****** **   ** ** **  *:
1g88_B_1     235:KETPCWIEIHLHRALQLLDEVLHTM: 259
SecStr          :GGSSSEEEEEEHHHHHHHHHHHTTS:    
ExpBur          :eebbbbbbbebebbeebbeebeeee:    
Contact         :b      b b b  bb bb  bb                                                                             


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