Protein Model on 6ryf_A_1_B_1 (TEMPLATE: 6ryf )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(AMPN_HUMAN) A 1 (A) polymer(polypeptide(L)) [856 aa] Endoplasmic reticulum aminopeptidase 1 :ERAP1_HUMAN
2 b B 1 (G) polymer(polypeptide(L)) [10 aa] PSE-ARG-ILE-GLN-ARG-ALA-PHE-VAL-THR-ILE 211Q 213Q(E) 351A(S) 352G 353A 354M 355E 363R 385V(T) 388H 389E 392H 411E 472F 473D 474A(D) 477Y 478S(D) 696E(F) 700S(N) 705F(Y) 706K 755N(Q) 759T(L) 830A(F) 834C(R) 861S(Q) 868N(R) 896F(S) (identity: 48.3 %/36.1 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:6ryf_A_1 identity=36.1%
queryA        71:WNRYRLPNTLKPDSYRVTLRPYLTPNDRGLYVFKGSSTVRFTCKEATDVIIIHSKKLNYTLSQGHRVVLRGVGGSQPPDIDKTELVEPTEYLVVHLKGS-: 169
                :**  ***    *  *       **        * *   *  *    *  ** **  *     *  *  **              *  *       *    :
6ryf_A_1       4:WNKIRLPEYVIPVHYDLLIHANLTT-----LTFWGTTKVEITASQPTSTIILHSHHL-----QISRATLRKXXXXRLSEEPLQVLEHPRQEQIALLAPEP:  93
SecStr          :   SS  SSEEEEEEEEEEEEETTT-----TEEEEEEEEEEEESS  SEEEEE SS -----EEEEEEEE ----   EEE EEEEETTTTEEEEE SS :    
ExpBur          :beeeebbeebebebbbbbbebebee-----eebebbbebebebeeebebbbbbbbeb-----eeeebbbee----eeeeeebeeeeeeebbbbbbebeee:    

queryA       170:LVKDSQYEMDSEFEGELADDLAGFYRSEYM--EGNVRKVVATTQMQAADARKSFPCFDEPAMKAEFNITLIHPKDLTALSNM-LPKGPSTP--LPEDPNW: 264
                :*     *       * *     *** * *   **  *   * **     **  ******** ** * *         * *** * *       * **   :
6ryf_A_1      94:LLVGLPYTVVIHYAGNLSETFHGFYKSTYRTKEGELR-ILASTQFEPTAARMAFPCFDEPAFKASFSIKIRREPRHLAISNMPLVKSVTVAEGLIED---: 189
SecStr          :  TT  EEEEEEEEEE BSSSSEEEEEEEE TTS EE-EEEEEE TTTTGGGTS B  STTS BEEEEEEEE TT EEEESS EEEEEEEETTEEEE---:    
ExpBur          :beeebebebbbebebebbebbbbbbebebebeeeeee-ebbbbbbbbbbbbbbbbbbbbbebbbbbbbebebeeebebbbbbeeeeeeeeeeebbbb---:    
Contact         :                                           b b                                                      

queryA       265:NVTEFHTTPKMSTYLLAFIVSEFDYVEKQASNGVLIRIWARPSAIAAGHGDYALNVTGPILNFFAGHYDTPYPLPKSDQIGLPDFNAGAMENWGLVTYRE: 364
                :    *  * ****** *** * *  * *    **     * *  *     ****      * *       ****** *    ***  ******** ****:
6ryf_A_1     190:---HFDVTVKMSTYLVAFIISDFESVSKITKSGVKVSVYAVPDKI--NQADYALDAAVTLLEFYEDYFSIPYPLPKQDLAAIPDFQSGAMENWGLTTYRE: 284
SecStr          :---EE    SB GGG  EEEE  EEEEEE TTS EEEEEE GGGG--GG HHHHHHHHHHHHHHHHHHS    SSEEEEEEESS SSSEE  TTEEEEEG:    
ExpBur          :---ebeebeebbbbbbbbbbbebeeeeeebeeebebbbbbbeebb--ebbebbbebbbebbebbbebbebebebebbbbbbbbbbbeebbbbbbbbbbbb:    
Contact         :                                                                                      bbbbb       b 

queryA       365:NSLLFDPLSSSSSNKERVVTVIAHELAHQWFGNLVTIEWWNDLWLNEGFASYVEYLGADYAEPTWNLKDLMVLNDVYRVMAVDALASSHPLSTPASEINT: 464
                :  ****   ** * *       ************** *************   *        *     *          * **** **** ***      :
6ryf_A_1     285:SALLFDAEKSSASSKLGITMTVAHELAHQWFGNLVTMEWWNDLWLNEGFAKFMEFVSVSVTHPELKVGDYF-FGKCFDAMEVDALNSSHPVSTP---VEN: 380
SecStr          :GGT   TTT  HHHHHHHHHHHHHHHHTTTBTTTEEESSGGGTHHHHHHHHHHHHHHHHHH GGG GGGGH-HHHHHHHHHHHTSTT   SS  ---  S:    
ExpBur          :ebbbbeeeebbbebebebbbebbbbbbbbbbbbbbbbebbebbbbbbbbbbbbbbbbbeebbeebebeebb-beebbebbebbbbebbbebbbe---bee:    
Contact         :                    b  bb  b                  b                                                     

queryA       465:PAQISELFDAISYSKGASVLRMLSSFLSEDVFKQGLASYLHTFAYQNTIYLNLWDHLQE--------------------AVNNRSIQLPTTVRDIMNRWT: 544
                :**** * **  ** ***  * **   ** * ** *   **    * **    ***                                    *   ** **:
6ryf_A_1     381:PAQIREMFDDVSYDKGACILNMLREYLSADAFKSGIVQYLQKHSYKNTKNEDLWDSMASIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDVKTMMNTWT: 480
SecStr          :HHHHHHTSSHHHHHHHHHHHHHHHHHH HHHHHHHHHHHHHHTTTEEE HHHHHHHHHT -----------------------------  HHHHHHHHH:    
ExpBur          :bbebbbbbbebbebbbbbbbbbbeeebeeeebeebbbebbeebbeebbebeebbebbeee-----------------------------eebeebbebbb:    
Contact         :       bbb  bb                                                                                      

queryA       545:LQMGFPVITVDTSTGT---LSQEHFLLDPDSNVTRPSEFNYVWIVPITSIRDGRQQQDYWLIDVRAQNDLFSTSGNEWVLLNLNVTGYYRVNYDEENWRK: 641
                :** *** **  *  *      ***                * * ** * *          *        *      **   *    *** * *    *  :
6ryf_A_1     481:LQKGFPLITI-TVRGRNVHMKQEHYM----KGXXXXXDTGYLWHVPLTFITSKSDMVHRFLLKTKT-DVLILPEEVEWIKFNVGMNGYYIVHYEDDGWDS: 574
SecStr          :SS S EEEEE-EEETTEEEEEEEE  ----  -----       EEEEEEETTEEEEEEEEE SSE-EEEE SS  S EEESGGG SS EEEETTTHHHH:    
ExpBur          :ebbbbbbbbb-beeeeebebebebbe----ee-----eeeeebbbbbbbbbeeeeeeeeeebeeee-eebebeeeeebbbbbbebebbbbbbbeeebbee:    

queryA       642:IQTQLQRDHSAIPVINRAQIINDAFNLASAHKVPVTLALNNTLFLIEERQYMPWEAALSSL-SYFKLM--FDRSEVYGPMKNYLKKQVTPLFIHFRNNTN: 738
                :    *   * *     **  ** ** * *  *     **   * *  *   **    *  *    ***   *  **    *  *      *         :
6ryf_A_1     575:LTGLLKGTHTAVSSNDRASLINNAFQLVSIGKLSIEKALDLSLYLKHETEIMPVFQGLNELIPMYKLMEKRDMNEVETQFKAFLIRLLRDLI-----DKQ: 669
SecStr          :HHHHHHHHGGGS HHHHHHHHHHHHHHHHTTSS HHHHHHHHGGGGG   HHHHHHHHHHHHHHHHHHHTSS HHHHHHHHHHHHHHTHHHH-----HH :    
ExpBur          :bbebbeeeeeebeebbbbbbbbbbbbbbbeeebebeebbebbbbbeebeebbbbbbbbebbbebbbbbbbeebeebbeebbebbbebbeebb-----eeb:    
Contact         :                                                      b   b  b  bb                                  

queryA       739:NWREIPENLMDQYSEVNAISTACSNGVPECEEMVSGLFKQWMENPNNNPIHPNLRSTVYCNAIAQGGEEEWDFAWEQFRNATLVNEADKLRAALACSKEL: 838
                : *                   **      *     * *  * *   *          *   *      * ***            *      **      :
6ryf_A_1     670:TWTD-EGSVSERMLRSQLLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTLAVF--AVGAQSTEGWDFLYSKYQFSLSSTEKSQIEFALCRTQNK: 766
SecStr          : SSS- S HHHHHHHHHHHHHHHHTT HHHHHHHHHHHHHHHHTTT     HHHHHHHH--HHHTTSHHHHHHHHHHHTT   HHHHHHHHHHHTT S H:    
ExpBur          :ebee-eeebeebbbbbebbbbbbebebeebbeebebebeebeeeeeeeebbbbbbbbbb--bbbbeeeebbebbbeebeebebbbbeebbbebbbbbeee:    
Contact         :                b   b                                                                      b   b    

queryA       839:WILNRYLSYTLNPDLIRKQDATSTIISITNNVIGQGLVWDFVQSNWKKLFNDYGGGSFSFSNLIQAVTRRFSTEYELQQLEQFKKDNEETGFGSGTRALE: 938
                :  *   *      * *  *        *  *  *  * * *   ** **      ** *        *  ***   *     *     *   **  *   :
6ryf_A_1     767:EKLQWLLDESFKGDKIKTQEFPQILTLIGRNPVGYPLAWQFLRKNWNKLVQKFELGSSSIAHMVMGTTNQFSTRTRLEEVKGFFSSLKEN--GSQLRCVQ: 864
SecStr          :HHHHHHHHHHHHTSSS GGGHHHHHHHHHTSTTTHHHHHHHHHHTHHHHHHHH TT HHHHHHHHHHHTT  SHHHHHHHHHHHHTTGGG--TTT HHHH:    
ExpBur          :ebbeebbeebeeeeebebbbbbebbbbbbebbebbebbbebbeebbeebbeebebbbebbeebbebbbebbbeeebbeebeebbeebeee--beebebbe:    
Contact         :                      b      b                           b                                          

queryA       939:QALEKTKANIKWVKENKEVVLQWF: 962
                :*  *    ** *   *      * :
6ryf_A_1     865:QTIETIEENIGWMDKNFDKIRVWL: 888
SecStr          :HHHHHHHHHHHHHHHHHHHHHHHH:    
ExpBur          :bbbbbbebbbebbeebeeebeebb:    


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