Protein Model on 5y1s_A_1_F_1 (TEMPLATE: 5y1s )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(AMPN_HUMAN) A 1 (A) polymer(polypeptide(L)) [890 aa] M1 family aminopeptidase :AMP1_PLAFQ
2 b F 1 (A) non-polymer(E8F) (2S)-2-[(3,4-dimethylphenyl)methylcarbamoylamino]-4-methyl-N-oxidanyl-pentanamide 213Q(E) 214A 351A(V) 352G 353A 355E 385V 388H 389E 392H 411E 469S(E) 472F(Y) 477Y (identity: 71.4 %/29.8 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:5y1s_A_1 identity=29.8%
queryA       134:GHRVVLRGVG-GSQPPDIDKTELVEPTEYL----VVHLKGSLVKDSQYEMDSE--FEGELADDLAGFYRSEYMEGNVRKVVATTQMQAADARKSFPCFDE: 226
                :*   *  ***       *    ***  **             *  *     **     *    * * * *        *     *  *   *      * :
5y1s_A_1      70:GEDLVFDGVGLKINEISINNKKLVEGEEYTYDNEFLTIFSKFVPKSKFAFSSEVIIHPETNYALTGLYKS--------KNIIVSQCEATGFRRITFFIDR: 161
SecStr          :S  EEEE  S EEEEEEETTEE  BTTTEEE SSEEEE GGGS SSSEEEEEEEEE GGG TT SEEEEE--------TTEEEEE TTTTGGGTS B  S:    
ExpBur          :eeebebbbeebeeeebbbeeeebeeeebbebeeeebbbeeeebeeeebebbbbbbbebeebebbbbbbeb--------eebbbbbbbbbbbbebbbbbbe:    
Contact         :                                                                                      bb            

queryA       227:PAMKAEFNITLIHPKDL--TALSN-------MLPKGPSTPLPEDPNWNVTEFHTTPKMSTYLLAFIVSEFD-----YVEKQASNGVLIRIWARPSAIAAG: 312
                :* * *    *    *      ***         * *       **       *  *    ** *            *  *     *              :
5y1s_A_1     162:PDMMAKYDVTVTADKEKYPVLLSNGDKVNEFEIPGGRHGARFNDP-------HLKP---CYLFAVVAGDLKHLSATYITKYTKKKVELYVFSEEKYVSKL: 251
SecStr          :TT  EEEEEEEEEETTT  EEEESSEEEEEEEETTTEEEEEEEEE-------EEE ---GGG  EEEE EEEEEEEEE TTT  EEEEEEEEEGGGGGG :    
ExpBur          :bbbbbebebbbbbeeeebeebbbbeeeeeeeeeeeebbbbebebe-------eebb---bbbbbbbbbebeeeebebebeeeeeebebebbbeeebeebb:    

queryA       313:HGDYALNVTGPILNFFAGHYDTPYPLPKSDQIGLPDFNAGAMENWGLVTYRENSLLFDPLSSSSSNKERVVTVIAHELAHQWFGNLVTIEWWNDLWLNEG: 412
                :    **        *        * *         *** ***** **     ****     *      *  **  **  *   ** **   *  * * **:
5y1s_A_1     252:Q--WALECLKKSMAFDEDYFGLEYDLSRLNLVAVSDFNVGAMENKGLNIFNANSLLASKKNSIDFSYARILTVVGHEYFHNYTGNRVTLRDWFQLTLKEG: 349
SecStr          :H--HHHHHHHHHHHHHHHHH     SSEEEEEEES  SSSEE  TTEEEEEGGGT   TTTS HHHHHHHHHHHHHHHHTTTBTTTEEESSGGGHHHHHH:    
ExpBur          :e--bbbebbeebbebbbebbebbbbbeebbbbbbbbbbebbbbbbbbbbbbbebbbbbbeebbbebbeebbbbbbbbbbbbbbbbbbbbebbbbbbbbbb:    
Contact         :                                      bbb b                             b  bb  b                  b 

queryA       413:FASYVEYLGADYAEPTWNLKDLMVLNDVYRVMAVDALASSHPLSTPASEINTPAQISELFDAISYSKGASVLRMLSSFLSEDVFKQGLASYL: 504
                :     * *       *        *  *     *  *  * *** *                  * **  * **    * *   * *   * :
5y1s_A_1     350:LTVHRENLFSEEMTKTVTTR----LSHVDLLRSVQFLEDSSPLSHPIRP-ESYVSMENFYTTTVYDKGSEVMRMYLTILGEEYYKKGFDIYI: 436
SecStr          :HHHHHHHHHHHHHH  THHH----HHHHHHHHHHHHHHHTSTT   SS -SEESSGGGG  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH:    
ExpBur          :bbbbbbbbbbeeebebebbb----bebbbebbbbbbbbbebebbbbbbb-eebbbbebbebbbbeebbbbbbbbbbebbeeeebeebbeebb:    
Contact         :                                                        b  b    b                                   


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