Protein Model on 5j6s_A_1_O_1 (TEMPLATE: 5j6s )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]


MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(AMPN_HUMAN) A 1 (A) polymer(polypeptide(L)) [910 aa] Endoplasmic reticulum aminopeptidase 2 :ERAP2_HUMAN
2 b O 1 (A) non-polymer(6GA) (2S)-N~1~-benzyl-2-[(4-fluorophenyl)methyl]-N~3~-hydroxypropanediamide 211Q(D) 213Q(E) 351A(P) 352G 353A 354M 355E 388H 389E 392H 411E 477Y 896F(Y) (identity: 69.2 %/36.8 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:5j6s_A_1 identity=36.8%
queryA        71:WNRYRLPNTLKPDSYRVTLRPYLTPNDRGLYVFKGSSTVRFTCKEATDVIIIHSKKL---NYTLS--QGHRVVLRG--VGGSQPPDIDKTELVEPTEYLV: 163
                :*   ***    *  *     * **  *     *  *         **  ** *** *   * **      *    *        *      *  * * * :
5j6s_A_1      64:WQELRLPSVVIPLHYDLFVHPNLTSLD-----FVASEKIEVLVSNATQFIILHSKDLEITNATLQSEEDSRYMKPGKELKVLSYPAHEQIALLVP-EKLT: 157
SecStr          :   SS  TTEEEEEEEEEEEEETTTTE-----EEEEEEEEEEESS  SEEEEE  S EEEEEEEEESS GGG SS  B EEE  GGGTEEEEE S-S   :    
ExpBur          :beeeebbebbebebbebbbebebeeee-----bebebebebebeeebeebbbbbeebeeeebebbbeebeebeeeeeebeebeeeeebbbbbbbe-eebe:    

queryA       164:VHLKGSLVKDSQYEMDSEFEGELADDLAGFYRSEYME-GNVRKVVATTQMQAADARKSFPCFDEPAMKAEFNITLIHPKDLTALSNMLPKGPSTPLP---: 259
                : ***        *     *   * *   *** * *   *      * *      **  *******  ** * *         ***** **     *    :
5j6s_A_1     158:PHLK--------YYVAMDFQAKLGDGFEGFYKSTYRTLGGETRILAVTDFEPTQARMAFPCFDEPLFKANFSIKIRRESRHIALSNM-PKVKTIELEGGL: 248
SecStr          :TT E--------EEEEEEEEEE BSSSSEEEEEEEE TTS EEEEEEEE TTTTGGGTS B   TTS BEEEEEEEE TT EEEESS- EEEEEE SSS :    
ExpBur          :eeee--------bbbbbebebebeeebbbbbebebebeeeeeeebbbbbbbbbbbbebbbbbbbbebbbebbbebebeeebebbbbb-beeeeeebeeee:    
Contact         :                                                b b                                                 

queryA       260:-EDPNWNVTEFHTTPKMSTYLLAFIVSEFDYVEKQASNGVLIRIWARPSAIAAGHGDYALNVTGPILNFFAGHYDTPYPLPKSDQIGLPDFNAGAMENWG: 358
                : **       * ** ****** * **  *       * **   * * *      *  ***      * *     *  *** * * *  ***  *******:
5j6s_A_1     249:LED------HFETTVKMSTYLVAYIVCDFHSLSGFTSSGVKVSIYASPDKRNQTH--YALQASLKLLDFYEKYFDIYYPLSKLDLIAIPDFAPGAMENWG: 340
SecStr          :EEE------EE    SB GGG  EEEE  EEEEEE TTS EEEEEE GGGGGG H--HHHHHHHHHHHHHHHHHT    SSEEEEEEESS SSSEE  TT:    
ExpBur          :bbb------bbeebeebbbbbbbbbbbbbeeeebebeeebebbbbbbeebeebbe--bbbebbbebbebbbebbebebebebbbbbbbbbbbeebbbbbb:    
Contact         :                                                                                            bbbbb   

queryA       359:LVTYRENSLLFDPLSSSSSNKERVVTVIAHELAHQWFGNLVTIEWWNDLWLNEGFASYVEYLGADYAEPTWNLKDLMVLNDVYRVMAVDALASSHPLSTP: 458
                :* **** ******  ** * *  *  **************** ***** ******* * *        *     *   **    *   * * ** * * *:
5j6s_A_1     341:LITYRETSLLFDPKTSSASDKLWVTRVIAHELAHQWFGNLVTMEWWNDIWLNEGFAKYMELIAVNATYPELQFDDYF-LNVCFEVITKDSLNSSRPISKP: 439
SecStr          :EEEEEHHHH   TTT  HHHHHHHHHHHHHHHHHTTBTTTEEESSGGGTHHHHHHHHHHHHHHHHHH GGG HHHHT-HHHHHHHHHHHTSSS   SS  :    
ExpBur          :bbbbbbebbbbeeebbbbebebebbbbbbbbbbbbbbbbbbbbebbebbbbbbbbbbbbbbbbbeebbeebebeeeb-bebbbebbeebbbeebbebbee:    
Contact         :                             bb  b                  b                                               

queryA       459:ASEINTPAQISELFDAISYSKGASVLRMLSSFLSEDVFKQGLASYLHTFAYQNTIYLNLWDHLQEA----------VNNRSIQLPTT----------VRD: 538
                :*    ** ** * **  ** ***  * **  ** *  *  *   **  * * *     **  *             *                    *  :
5j6s_A_1     440:A---ETPTQIQEMFDEVSYNKGACILNMLKDFLGEEKFQKGIIQYLKKFSYRNAKNDDLWSSLSNSCLESDFTSGGVCHSDPKMTSNMLAFLGENAEVKE: 536
SecStr          : --- SHHHHHTT STTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTEEE HHHHHHHHHT       STT SSSSS    TTHHHHHHHHHHHHH:    
ExpBur          :b---eeeeebbbbbbebbbbbbbbbbbbbbeebeeebbeebbbebbeebeeebbebeebbebbbebbeeeeeeeebebeeeeeeeeeeebbeeebeebee:    
Contact         :                  b                                                                                 

queryA       539:IMNRWTLQMGFPVITV--DTSTGTLSQEHFLL-----DPDSNVTRPSEFNYVWIVPITSIRDGRQQQDYWLIDVRAQNDLFSTSGNEWVLLNLNVTGYYR: 631
                : *  **** * *   *  *     * ** **      **     *     * *  * *                     *       **  *    *** :
5j6s_A_1     537:MMTTWTLQKGIPLLVVKQDGCSLRLQQERFLQGVFQEDPE---WRALQERYLWHIPLTYSTSSSNVIHRHILKSKT-DTLDLPEKTSWVKFNVDSNGYYI: 632
SecStr          :HHHHHHHS S EEEEEE STTEEEEEEEE  SS  TTSHH---HHHTTSS     EEEEEESS    EEEE  SSE-EEEE SS  S EEESGGG SS E:    
ExpBur          :bbebbbebbbbbbbbbeeeeeebebebbbbbbbbeeeeee---beebbeebebebbbbbbbeeeeeeeeeebeeee-bebebeeebebbbbbbbbbbbbb:    

queryA       632:VNYDEENWRKIQTQLQRDHSAIPVINRAQIINDAFNLASAHKVPVTLALNNTLFLIEERQYMPWEAALSSLSYFKLMFDR---SEVYGPMKNYLKKQVTP: 728
                :* *    *    ***   *       *   * * * *  *       **  *  *  *         ** *  *  * **   *      * **     *:
5j6s_A_1     633:VHYEGHGWDQLITQLNQNHTLLRPKDRVGLIHDVFQLVGAGRLTLDKALDMTYYLQHETSSPALLEGLSYLESFYHMMDRRNISDISENLKRYLLQYFKP: 732
SecStr          :EEETTTHHHHHHHHHHHHGGGS HHHHHHHHHHHHHHHHTTSS HHHHHHHHGGGGG   HHHHHHHHHHHHHHHHHHHHTT HHHHHHHHHHHHHTTHH:    
ExpBur          :bbbeeebbeebbebbeeebeebeebbbbbbbbbbbbbbbbebbebeebbebbbbbeebeebbbbbbbbebbeebbbbbebeebeebbebbbebbbebbee:    

queryA       729:LFIHFRNNTNNWREIPENLMDQYSEVNAISTACSNGVPECEEMVSGLFKQWMENPNNNPIHPNLRSTVYCNAIAQGGEEEWDFAWEQFRNATLVNEADKL: 828
                :           *        *          **      *      ** ****      *       **           *    **        *  * :
5j6s_A_1     733:VI-----DRQSWSD-KGSVWDRMLRSALLKLACDLNHAPCIQKAAELFSQWMESSGKLNIPTDVLKIVY--SVGAQTTAGWNYLLEQYELSMSSAEQNKI: 824
SecStr          :HH-----HS  SSS- S HHHHHHHHHHHHHHHHTT HHHHHHHHHHHHHHHHTTT S   TTTHHHHH--HHHTTSHHHHHHHHHHHHH S HHHHHHH:    
ExpBur          :bb-----eebebbe-eeebbeebbbeebbebbbbbeeeebeeebeebbeebeeeebeeebebbbbebbb--bbbbeeeebbebbbebbeebbbbbbeebb:    

queryA       829:RAALACSKELWILNRYLSYTLNPDLIRKQDATSTIISITNNVIGQGLVWDFVQSNWKKLFNDYGGGSFSFSNLIQAVTRRFSTEYELQQLEQFKKDNEET: 928
                :  **  **    *            *  *        *     ** * ****  **  *      **      *   *  **    **    *    *  :
5j6s_A_1     825:LYALSTSKHQEKLLKLIELGMEGKVIKTQNLAALLHAIARRPKGQQLAWDFVRENWTHLLKKFDLGSYDIRMIISGTTAHFSSKDKLQEVKLFFESLEAQ: 924
SecStr          :HHHHTT S HHHHHHHHHHHHHTSSS GGGHHHHHHHHHHSGGGHHHHHHHHHHSHHHHHHHS SS HHHHHHHHHHHTT  SHHHHHHHHHHHHHHTTT:    
ExpBur          :bebbbbbeeeebbeebbebbbeeeebbbbbbbebbebbbeeeebbebbbebbeeebeebeeebebbbebbbebbebbbebbbbeebeeebeebbeebeee:    
Contact         :                                                                   b                                

queryA       929:GFGSGTRALEQALEKTKANIKWVKENKEVVLQWFTENSK: 967
                :  **        **    ****   *      *   *  :
5j6s_A_1     925:--GSHLDIFQTVLETITKNIKWLEKNLPTLRTWLMVNTR: 961
SecStr          :--T   THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH:    
ExpBur          :--ebebebbebbbbbbebbbebbeebbeebeebbeebee:    


Input Residue Numbers for Focused Sites

ex) 2,15,123