Protein Model on 4p8q_A_1_C_1 (TEMPLATE: 4p8q )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(AMPN_HUMAN) A 1 (A) polymer(polypeptide(L)) [860 aa] Leucyl-cystinyl aminopeptidase :LCAP_HUMAN
2 b C 1 (C) branched(oligosaccharide) 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose 90R(H) 91P 92Y(N) 94T 240P(D) 242D(Q) 264W(L) (identity: 28.6 %/36.4 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:4p8q_A_1 identity=36.4%
queryA        71:WNRYRLPNTLKPDSYRVTLRPYLTPNDRGLYVFKGSSTVRFTCKEATDVIIIHSKKLNYTLSQGHRVVLRGVGGSQPPDIDKTELVEPTEYLVVHLKGSL: 170
                :*   ***    *  *   * * **        * ** *        *  ** **   *       **       **       *         *     *:
4p8q_A_1      10:WAQIRLPTAVVPLRYELSLHPNLTS-----MTFRGSVTISVQALQVTWNIILHSTGHNIS-----RVTFMSAVSSQEKQAEILEYAYHGQIAIVAPE-AL:  98
SecStr          :  SSS  SSEEEEEEEEEEEEETTT-----TEEEEEEEEEEEESS EEEEEEE  S EEE-----EEEE  TT  S EE EEEEETTTTEEEEEEEE-EE:    
ExpBur          :eeeeebeebbebebbebebebebee-----eebebebebebebeeeeeebbbbbeebeee-----ebbbbeeeeeeeeebeebeeeebbbbbbebee-eb:    
Contact         :                   bbb b                                                                            

queryA       171:VKDSQYEMDSEFEGELADDLAGFYRSEYM-EGNVRKVVATTQMQAADARKSFPCFDEPAMKAEFNITLIHPKDLTALSNMLPKGPSTPLPEDPNWNVTEF: 269
                :     *    *          ***   *  * *  *  * **     **  ******** ** * *  *     ****** **  *  *  *      **:
4p8q_A_1      99:LAGHNYTLKIEYSANISSSYYGFYGFSYTDESNEKKYFAATQFEPLAARSAFPCFDEPAFKATFIIKIIRDEQYTALSNM-PKKSSVVL--DDGLVQDEF: 195
SecStr          : TT EEEEEEEEEEE BSSSSEEEEEEEE TTS EEEEEEEE TTTTHHHHS B  SSSSEEEEEEEEEEETTSEEEESS- EEEEEE --TTSEEEEEE:    
ExpBur          :eeeeebebbbebebebeeebebbbbbebebeeeeebebbbbbbbbbbbbebbbbbbbbebbbbbbbebbbeeebebbbbb-eeeeeeee--eeebbbbeb:    
Contact         :                                                                      b b                     b     

queryA       270:HTTPKMSTYLLAFIVSEFDYVEKQASNGVLIRIWARPSAIAAGHGDYALNVTGPILNFFAGHYDTPYPLPKSDQIGLPDFNAGAMENWGLVTYRENSLLF: 369
                :    ****** **** *      *  ** *  * * *  *   *  ***  *   * **       *** * *    *** ********* * **  ** :
4p8q_A_1     196:SESVKMSTYLVAFIVGEMKNL-SQDVNGTLVSIYAVPEKIGQVH--YALETTVKLLEFFQNYFEIQYPLKKLDLVAIPDFEAGAMENWGLLTFREETLLY: 292
SecStr          :    SEEGGG  EEEE  EEE-EEEETTEEEEEEE GGGSGGGH--HHHHHHHHHHHHHHHHHTS  SSSEEEEEEES SS      TTEEEEEHHHH  :    
ExpBur          :eebeebbbbbbbbbbbbbeee-eeebeebebbbbbbeeebeebe--bbbebbbebbebbbebbebebebebbbbbbbbbeebbebbbbbbbbbebebbeb:    

queryA       370:DPLSSSSSNKERVVTVIAHELAHQWFGNLVTIEWWNDLWLNEGFASYVEYLGADYAEPTWNLKDLMVLNDV----YRVMAVDALASSHPLSTPASEINTP: 465
                :*   **      *   ***************  ************   **            * *    *        *  * * **** *   *     :
4p8q_A_1     293:DSNTSSMADRKLVTKIIAHELAHQWFGNLVTMKWWNDLWLNEGFATFMEYFSLEKI-----FKELSSYEDFLDARFKTMKKDSLNSSHPIS---SSVQSS: 384
SecStr          : TTT  HHHHHHHHHHHHHHHHTTTBTTTEEESSGGGHHHHHHHHHHHHHHHHHHT----- GGG THHHHHHHHHHHHHHHTSTT   S ---    SH:    
ExpBur          :eeeebbbeeebebbbbbbbbbbbbbbbbbbbbebbebbbbbbbbbbbbbbbbbeee-----beebbbebebbebbbebbeebbbeebebbe---eebeee:    

queryA       466:AQISELFDAISYSKGASVLRMLSSFLSEDVFKQGLASYLHTFAYQNTIYLNLWDHLQEAVNNRSIQLPTTVRDIMNRWTLQMGFPVITVDTSTGTL--SQ: 563
                : ** * **  ** ** * * **   ******      ***   *       ***   *  *         *   *  **** ***  **      *   *:
4p8q_A_1     385:EQIEEMFDSLSYFKGSSLLLMLKTYLSEDVFQHAVVLYLHNHSYASIQSDDLWDSFNEVXNQ-----TLDVKRMMKTWTLQKGFPLVTVQKKGKELFIQQ: 479
SecStr          :HHHHHT  HHHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHTTTEEE THHHHHHHT  -  -----SSS TTSHHHHHSSSS EEEEEEEETTEEEEEE:    
ExpBur          :eebeebeeebbbbbbbbbbbbbbeebeeeebeebbbebbeebeeeebebeebbebbbeb-ee-----eeeebebbebbbebbbbbbbbbeeeeeebebeb:    

queryA       564:EHFLLDPDSNVTRPSEFNYVWIVPITSIRDGRQQQDYWLIDV--RAQNDLFSTSGNEWVLLNLNVTGYYRVNYDEENWRKIQTQLQRDHSAIPVINRAQI: 661
                :* * *         *   * *  *      **    *               *    **  * *  *** * *    *     **           **  :
4p8q_A_1     480:ERFFLNM-XXXXXXSDTSYLWHIPLSYVTEGRNYSKYQSVSLLDKKSGVINLTEEVLWVKVNINMNGYYIVHYADDDWEALIHQLKINPYVLSDKDRANL: 578
SecStr          :EE     -------  S     EE  EEEE TTS  EEE  EE SSEEEEE SS  SEEEESGGG SSSEEEE HHHHHHHHHHHHH GGGS HHHHHHH:    
ExpBur          :ebbebee-------eeeeeebbbbbbbbbbbeeeeeeeeeeebeeeeeebebeeebebbbbbbebebbbbbbbeeebbeebbebbeeebeebebebbbbb:    

queryA       662:INDAFNLASAHKVPVTLALNNTLFLIEERQYMPWEAALSSLSYFKLMFDRSEVYGPMKNYLKKQVTPLFIHFRNN----------TNNWREIPENLMDQY: 751
                :**  * **   ***   *      *  *    *   **       *     *  * *       **  *    *           *   **    *    :
4p8q_A_1     579:INNIFELAGLGKVPLKRAFDLINYLGNENHTAPITEALFQTD---LIYNLLEKLGYM-DLASRLVTRVFKLLQNQIQQQTWTDEGTPSMRELRSALLE--: 672
SecStr          :HHHHHHHHHHTSS HHHHHHHGGGGGG   HHHHHHHHHHHH---HHHHHHHHTT H-HHHHHHHHHHHHHHHHHHHT  SSS S HHHHHHHHHHHH--:    
ExpBur          :bbbbbbbbebeebebebbbebbebbeebeebbbbebbbebbe---ebbbbbbbbeee-ebbeebbebbbebbeebbeebebeeeeebbebebbeebbe--:    

queryA       752:SEVNAISTACSNGVPECEEMVSGLFKQWMENPNNNPIHPNLRSTVYCNAIAQGGEEEWDFAWEQFRNATLVNEADKLRAALACSKELWILNRYLSYTLNP: 851
                :        **      *      **  **              **            * *            *  *   *** *     *       ** :
4p8q_A_1     673:-------FACTHNLGNCSTTAMKLFDDWMASNGTQSLPTDVMTTVF--KVGAKTDKGWSFLLGKYISIGSEAEKNKILEALASSEDVRKLYWLMKSSLNG: 763
SecStr          :-------HHHHTT SSHHHHHHHHHHHHHHTTT S   HHHHHHHH--HHHTTSHHHHHHHHHHHHH   HHHHHHHHHHHHH   HHHHHHHHHHHHHT:    
ExpBur          :-------bbbebebeebbeebeeebeebbeeeeeeebebbbbbbbb--bbbbeeeebbeebbebbeeeeebeebebbbbbbbbbeeeebbeebbebbbee:    

queryA       852:DLIRKQDATSTIISITNNVIGQGLVWDFVQSNWKKLFNDYGGGSFSFSNLIQAVTRRFSTEYELQQLEQFKKDNEETGFGSGTRALEQALEKTKANIKWV: 951
                :*  * *     *        *  * ****  ** **      **    *     *  ***   *     *     *  *    *    ***    ** * :
4p8q_A_1     764:DNFRTQKLSFIIRTVGRHFPGHLLAWDFVKENWNKLVQKFPLGSYTIQNIVAGSTYLFSTKTHLSEVQAFFENQSEATF--RLRCVQEALEVIQLNIQWM: 861
SecStr          :SSS GGGHHHHHHHHHHSGGGHHHHHHHHHHTHHHHHHHS TTSHHHHHHHHHHHTT  SHHHHHHHHHHHHHH TTTT--TSHHHHHHHHHHHHHHHHH:    
ExpBur          :eebeeebbbbbbebbbebeebbeebbebbeeebeebeeebeeebeebeebbebbbebbbeeeebeebeebbeeeeeebb--ebebbeebbbebebbbebb:    

queryA       952:KENKEVVLQWF: 962
                :  *      * :
4p8q_A_1     862:EKNLKSLTWWL: 872
SecStr          :HHHTTGGGG  :    
ExpBur          :eebbeebeebe:    


Input Residue Numbers for Focused Sites

ex) 2,15,123