Protein Model on 3qnf_B_1_H_1 (TEMPLATE: 3qnf )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:2]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(AMPN_HUMAN) B 1 (B) polymer(polypeptide(L)) [802 aa] Endoplasmic reticulum aminopeptidase 1 :ERAP1_HUMAN
2 b H 1 (B) non-polymer(NAG) 2-acetamido-2-deoxy-beta-D-glucopyranose 90R(H) 91P(A) 92Y(N) 240P(E) 258L (identity: 20.0 %/34.0 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:3qnf_B_1 identity=34.0%
queryA        71:WNRYRLPNTLKPDSYRVTLRPYLTPNDRGLYVFKGSSTVRFTCKEATDVIIIHSKKLNYTLSQGHRVVLRGVGGSQPPDIDKTELVEPTEYLVVHLKGS-: 169
                :**  ***    *  *       **        * *   *  *    *  ** **  *     *  *  **              *  *       *    :
3qnf_B_1      55:WNKIRLPEYVIPVHYDLLIHANLTT-----LTFWGTTKVEITASQPTSTIILHSHHL-----QISRATLRKXXXXXLSEEPLQVLEHPRQEQIALLAPEP: 144
SecStr          :   SS  TTEEEEEEEEEEEEETTT-----TEEEEEEEEEEEESS EEEEEEE SS -----EEEEEEEE -----  EEEEEEEEEGGGTEEEEEEEEE:    
ExpBur          :beeeebbeebebebbebbbebebee-----eebebbbebebebeeebebbbbbbbeb-----ebeebbbee-----eeeeebeeeeeeebebbbbebeee:    
Contact         :                   bbb                                                                              

queryA       170:LVKDSQYEMDSEFEGELADDLAGFYRSEYM--EGNVRKVVATTQMQAADARKSFPCFDEPAMKAEFNITLIHPKDLTALSNM-LPKGPSTP--LPEDPNW: 264
                :*     *       * *     *** * *   **  *   * **     **  ******** ** * *         * *** * *       * **   :
3qnf_B_1     145:LLVGLPYTVVIHYAGNLSETFHGFYKSTYRTKEGELR-ILASTQFEPTAARMAFPCFDEPAFKASFSIKIRREPRHLAISNMPLVKSVTVAEGLIED---: 240
SecStr          :E BT EEEEEEEEEEE BSSSSEEEEEEEE TTS EE-EEEEEE TTTTGGGTS B  STTS BEEEEEEEE TT EEEESS EEEEEEEETTEEEE---:    
ExpBur          :beeeeebbbbbebebebbeeeebbbbbebebeeeeee-bbbbbbbbebbbbbbbbbbbbbebbbbbbbbbebeeebebbbbbeeeeeeeeeeeebbb---:    
Contact         :                                                                        b                    b      

queryA       265:NVTEFHTTPKMSTYLLAFIVSEFDYVEKQASNGVLIRIWARPSAIAAGHGDYALNVTGPILNFFAGHYDTPYPLPKSDQIGLPDFNAGAMENWGLVTYRE: 364
                :    *  * ****** *** * *  * *    **     * *  *     ****      * *       ****** *    ***  ******** ****:
3qnf_B_1     241:---HFDVTVKMSTYLVAFIISDFESVSKITKSGVKVSVYAVPDKI--NQADYALDAAVTLLEFYEDYFSIPYPLPKQDLAAIPDFQSGAMENWGLTTYRE: 335
SecStr          :---EE    SB GGG  EEEE  EEEEEE TT  EEEEEE TTTG--GGGHHHHHHHHHHHHHHHHHHTS  SSSEEEEEEETT  SSEE  TTEEEEEG:    
ExpBur          :---ebeebeebbbbbbbbbbbbbeeeeeebeeebebbbbbbeeeb--eebebbbebbbebbebbbebbebebebebbbbbbbbebeeebbbbbbbbbbeb:    

queryA       365:NSLLFDPLSSSSSNKERVVTVIAHELAHQWFGNLVTIEWWNDLWLNEGFASYVEYLGADYAEPTWNLKDLMVLNDVYRVMAVDALASSHPLSTPASEINT: 464
                :  ****   ** * *       ************** *************   *        *     *          * **** **** ***      :
3qnf_B_1     336:SALLFDAEKSSASSKLGITMTVAHELAHQWFGNLVTMEWWNDLWLNEGFAKFMEFVSVSVTHPELKVGDYF-FGKCFDAMEVDALNSSHPVSTP---VEN: 431
SecStr          :GGT   TTT  TTHHHHHHHHHHHHHHHTTBTTTBEESSGGGHHHHHHHHHHHHHHHHHHH GGG HHHHH-HHHHHHHHHHHSSTT   SS  --- S :    
ExpBur          :ebbbbeeeeeeebeebebbbebbbbbbbbbbbbbbbbbbbebbbbbbbbbbbbbbbbbeebbeebbbeeeb-bebbbebbeebbeeebeebbee---eee:    

queryA       465:PAQISELFDAISYSKGASVLRMLSSFLSEDVFKQGLASYLHTFAYQNTIYLNLWDHLQE--------------------AVNNRSIQLPTTVRDIMNRWT: 544
                :*      **  ** ***  * **   ** * ** *   **    * **    ***                                    *   ** **:
3qnf_B_1     432:PXXXXXMFDDVSYDKGACILNMLREYLSADAFKSGIVQYLQKHSYKNTKNEDLWDSMASIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDVKTMMNTWT: 531
SecStr          : -----  S HHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHTTTSEE HHHHHHHHTT -----------------------------  HHHHHHHHH:    
ExpBur          :e-----eeeeeebbbbbbbbbbbbebbeeeebbebbbebbeebeeebbebeebbebbeee-----------------------------eebeebbebbb:    

queryA       545:LQMGFPVITVDTSTGT---LSQEHFLLDPDSNVTRPSEFNYVWIVPITSIRDGRQQQDYWLIDVRAQNDLFSTSGNEWVLLNLNVTGYYRVNYDEENWRK: 641
                :** *** **  *  *      ***                * * ** * *          *        *      **   *    *** * *    *  :
3qnf_B_1     532:LQKGFPLITI-TVRGRNVHMKQEHYMXXXXXXXXT----GYLWHVPLTFITSKSDMVHRFLLKTKT-DVLILPEEVEWIKFNVGMNGYYIVHYEDDGWDS: 625
SecStr          :HS S EEEEE-EEETTEEEEEEEE  -------- ----     EEEEEEESS  S EEEEE SSE-EEEE SS  S EEESGGG SSSEEEE TTHHHH:    
ExpBur          :ebebbbbbbb-beeeeebebebebbe--------e----eeebbbbbbbbbeeeeeeeebbbeeee-eebebeeebebbbbbbbbbbbbbbbbeeebbee:    

queryA       642:IQTQLQRDHSAIPVINRAQIINDAFNLASAHKVPVTLALNNTLFLIEERQYMPWEAALSSL-SYFKLM--FDRSEVYGPMKNYLKKQVTPLFIHFRNNTN: 738
                :    *   * *     **  ** ** * *  *     **   * *  *   **    *  *    ***   *  **    *  *      *         :
3qnf_B_1     626:LTGLLKGTHTAVSSNDRASLINNAFQLVSIGKLSIEKALDLSLYLKHETEIMPVFQGLNELIPMYKLMEKRDMNEVETQFKAFLIRLLRDLI-----DKQ: 720
SecStr          :HHHHHHHHGGGS HHHHHHHHHHHHHHHHTTSS HHHHHHHHGGGGG  SHHHHHHHHHHHHHHHHHHTTSS HHHHHHHHHHHHHHHHHHH-----HH :    
ExpBur          :bbebbeeebeebeebbbbbbbbbbbebbeeeebebebbbebbebbeebeebbbbbbbbebbeebbbbbbbeebeebbeebbebbbebbeebb-----eeb:    

queryA       739:NWREIPENLMDQYSEVNAISTACSNGVPECEEMVSGLFKQWMENPNNNPIHPNLRSTVYCNAIAQGGEEEWDFAWEQFRNATLVNEADKLRAALACSKEL: 838
                : *                   **      *     * *  * *   *          *   *      * ***            *      **      :
3qnf_B_1     721:TWTD-EGSVSERMLRSQLLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTLAVF--AVGAQSTEGWDFLYSKYQFSLSSTEKSQIEFALCRTQNK: 817
SecStr          : SSS- S HHHHHHHHHHHHHHHHTT HHHHHHHHHHHHHHHHTTT S   HHHHHHHH--HHHTTSSHHHHHHHHTTTT   HHHHHHHHHHHHT S H:    
ExpBur          :ebee-eebebebebbeebbbbbbebebeebbeebeeebeebbeeeeeeebeebbbebbb--bbbbeeeebbeebeebeeeeeeeebbebbbebbbbbeee:    

queryA       839:WILNRYLSYTLNPDLIRKQDATSTIISITNNVIGQGLVWDFVQSNWKKLFNDYGGGSFSFSNLIQAVTRRFSTEYELQQLEQFKKDNEETGFGSGTRALE: 938
                :  *   *           *        *  *  *  * * *                          *  ***   *                       :
3qnf_B_1     818:EKLQWLLDEXXXXXXXXTQEFPQILTLIGRNPVGYPLAWQFLRKXXXXXXXXXXXXXXXXAHMVMGTTNQFSTRTRLEEVXXXXXXXXXX--XXXXXXXQ: 915
SecStr          :HHHHHHHH --------  SHHHHHHHHHHSTTTHHHHHHHHH ----------------  SSSTTTTT   HHHHHH ------------------- :    
ExpBur          :ebbeebbee--------eeeeeebbeebbbbbebbebbbeeeee----------------eebeeebbeebbeeebeeee-------------------e:    

queryA       939:QALEKTKANIKWVKENKEVVLQWF: 962
                :*  *    ** *   *      * :
3qnf_B_1     916:QTIETIEENIGWMDKNFDKIRVWL: 939
SecStr          :HHHHHHHHHHHHHHHHHHHHHHHH:    
ExpBur          :ebeeebeebbebbeebbeebeebb:    


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