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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(AMPN_HUMAN) | B 1 (B) | polymer(polypeptide(L)) [802 aa] | Endoplasmic reticulum aminopeptidase 1 :ERAP1_HUMAN | |
2 | b | H 1 (B) | non-polymer(NAG) | 2-acetamido-2-deoxy-beta-D-glucopyranose | 90R(H) 91P(A) 92Y(N) 240P(E) 258L (identity: 20.0 %/34.0 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:3qnf_B_1 identity=34.0% |
queryA 71:WNRYRLPNTLKPDSYRVTLRPYLTPNDRGLYVFKGSSTVRFTCKEATDVIIIHSKKLNYTLSQGHRVVLRGVGGSQPPDIDKTELVEPTEYLVVHLKGS-: 169 :** *** * * ** * * * * * ** ** * * * ** * * * : 3qnf_B_1 55:WNKIRLPEYVIPVHYDLLIHANLTT-----LTFWGTTKVEITASQPTSTIILHSHHL-----QISRATLRKXXXXXLSEEPLQVLEHPRQEQIALLAPEP: 144 SecStr : SS TTEEEEEEEEEEEEETTT-----TEEEEEEEEEEEESS EEEEEEE SS -----EEEEEEEE ----- EEEEEEEEEGGGTEEEEEEEEE: ExpBur :beeeebbeebebebbebbbebebee-----eebebbbebebebeeebebbbbbbbeb-----ebeebbbee-----eeeeebeeeeeeebebbbbebeee: Contact : bbb queryA 170:LVKDSQYEMDSEFEGELADDLAGFYRSEYM--EGNVRKVVATTQMQAADARKSFPCFDEPAMKAEFNITLIHPKDLTALSNM-LPKGPSTP--LPEDPNW: 264 :* * * * *** * * ** * * ** ** ******** ** * * * *** * * * ** : 3qnf_B_1 145:LLVGLPYTVVIHYAGNLSETFHGFYKSTYRTKEGELR-ILASTQFEPTAARMAFPCFDEPAFKASFSIKIRREPRHLAISNMPLVKSVTVAEGLIED---: 240 SecStr :E BT EEEEEEEEEEE BSSSSEEEEEEEE TTS EE-EEEEEE TTTTGGGTS B STTS BEEEEEEEE TT EEEESS EEEEEEEETTEEEE---: ExpBur :beeeeebbbbbebebebbeeeebbbbbebebeeeeee-bbbbbbbbebbbbbbbbbbbbbebbbbbbbbbebeeebebbbbbeeeeeeeeeeeebbb---: Contact : b b queryA 265:NVTEFHTTPKMSTYLLAFIVSEFDYVEKQASNGVLIRIWARPSAIAAGHGDYALNVTGPILNFFAGHYDTPYPLPKSDQIGLPDFNAGAMENWGLVTYRE: 364 : * * ****** *** * * * * ** * * * **** * * ****** * *** ******** ****: 3qnf_B_1 241:---HFDVTVKMSTYLVAFIISDFESVSKITKSGVKVSVYAVPDKI--NQADYALDAAVTLLEFYEDYFSIPYPLPKQDLAAIPDFQSGAMENWGLTTYRE: 335 SecStr :---EE SB GGG EEEE EEEEEE TT EEEEEE TTTG--GGGHHHHHHHHHHHHHHHHHHTS SSSEEEEEEETT SSEE TTEEEEEG: ExpBur :---ebeebeebbbbbbbbbbbbbeeeeeebeeebebbbbbbeeeb--eebebbbebbbebbebbbebbebebebebbbbbbbbebeeebbbbbbbbbbeb: queryA 365:NSLLFDPLSSSSSNKERVVTVIAHELAHQWFGNLVTIEWWNDLWLNEGFASYVEYLGADYAEPTWNLKDLMVLNDVYRVMAVDALASSHPLSTPASEINT: 464 : **** ** * * ************** ************* * * * * **** **** *** : 3qnf_B_1 336:SALLFDAEKSSASSKLGITMTVAHELAHQWFGNLVTMEWWNDLWLNEGFAKFMEFVSVSVTHPELKVGDYF-FGKCFDAMEVDALNSSHPVSTP---VEN: 431 SecStr :GGT TTT TTHHHHHHHHHHHHHHHTTBTTTBEESSGGGHHHHHHHHHHHHHHHHHHH GGG HHHHH-HHHHHHHHHHHSSTT SS --- S : ExpBur :ebbbbeeeeeeebeebebbbebbbbbbbbbbbbbbbbbbbebbbbbbbbbbbbbbbbbeebbeebbbeeeb-bebbbebbeebbeeebeebbee---eee: queryA 465:PAQISELFDAISYSKGASVLRMLSSFLSEDVFKQGLASYLHTFAYQNTIYLNLWDHLQE--------------------AVNNRSIQLPTTVRDIMNRWT: 544 :* ** ** *** * ** ** * ** * ** * ** *** * ** **: 3qnf_B_1 432:PXXXXXMFDDVSYDKGACILNMLREYLSADAFKSGIVQYLQKHSYKNTKNEDLWDSMASIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDVKTMMNTWT: 531 SecStr : ----- S HHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHTTTSEE HHHHHHHHTT ----------------------------- HHHHHHHHH: ExpBur :e-----eeeeeebbbbbbbbbbbbebbeeeebbebbbebbeebeeebbebeebbebbeee-----------------------------eebeebbebbb: queryA 545:LQMGFPVITVDTSTGT---LSQEHFLLDPDSNVTRPSEFNYVWIVPITSIRDGRQQQDYWLIDVRAQNDLFSTSGNEWVLLNLNVTGYYRVNYDEENWRK: 641 :** *** ** * * *** * * ** * * * * ** * *** * * * : 3qnf_B_1 532:LQKGFPLITI-TVRGRNVHMKQEHYMXXXXXXXXT----GYLWHVPLTFITSKSDMVHRFLLKTKT-DVLILPEEVEWIKFNVGMNGYYIVHYEDDGWDS: 625 SecStr :HS S EEEEE-EEETTEEEEEEEE -------- ---- EEEEEEESS S EEEEE SSE-EEEE SS S EEESGGG SSSEEEE TTHHHH: ExpBur :ebebbbbbbb-beeeeebebebebbe--------e----eeebbbbbbbbbeeeeeeeebbbeeee-eebebeeebebbbbbbbbbbbbbbbbeeebbee: queryA 642:IQTQLQRDHSAIPVINRAQIINDAFNLASAHKVPVTLALNNTLFLIEERQYMPWEAALSSL-SYFKLM--FDRSEVYGPMKNYLKKQVTPLFIHFRNNTN: 738 : * * * ** ** ** * * * ** * * * ** * * *** * ** * * * : 3qnf_B_1 626:LTGLLKGTHTAVSSNDRASLINNAFQLVSIGKLSIEKALDLSLYLKHETEIMPVFQGLNELIPMYKLMEKRDMNEVETQFKAFLIRLLRDLI-----DKQ: 720 SecStr :HHHHHHHHGGGS HHHHHHHHHHHHHHHHTTSS HHHHHHHHGGGGG SHHHHHHHHHHHHHHHHHHTTSS HHHHHHHHHHHHHHHHHHH-----HH : ExpBur :bbebbeeebeebeebbbbbbbbbbbebbeeeebebebbbebbebbeebeebbbbbbbbebbeebbbbbbbeebeebbeebbebbbebbeebb-----eeb: queryA 739:NWREIPENLMDQYSEVNAISTACSNGVPECEEMVSGLFKQWMENPNNNPIHPNLRSTVYCNAIAQGGEEEWDFAWEQFRNATLVNEADKLRAALACSKEL: 838 : * ** * * * * * * * * * *** * ** : 3qnf_B_1 721:TWTD-EGSVSERMLRSQLLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTLAVF--AVGAQSTEGWDFLYSKYQFSLSSTEKSQIEFALCRTQNK: 817 SecStr : SSS- S HHHHHHHHHHHHHHHHTT HHHHHHHHHHHHHHHHTTT S HHHHHHHH--HHHTTSSHHHHHHHHTTTT HHHHHHHHHHHHT S H: ExpBur :ebee-eebebebebbeebbbbbbebebeebbeebeeebeebbeeeeeeebeebbbebbb--bbbbeeeebbeebeebeeeeeeeebbebbbebbbbbeee: queryA 839:WILNRYLSYTLNPDLIRKQDATSTIISITNNVIGQGLVWDFVQSNWKKLFNDYGGGSFSFSNLIQAVTRRFSTEYELQQLEQFKKDNEETGFGSGTRALE: 938 : * * * * * * * * * * *** * : 3qnf_B_1 818:EKLQWLLDEXXXXXXXXTQEFPQILTLIGRNPVGYPLAWQFLRKXXXXXXXXXXXXXXXXAHMVMGTTNQFSTRTRLEEVXXXXXXXXXX--XXXXXXXQ: 915 SecStr :HHHHHHHH -------- SHHHHHHHHHHSTTTHHHHHHHHH ---------------- SSSTTTTT HHHHHH ------------------- : ExpBur :ebbeebbee--------eeeeeebbeebbbbbebbebbbeeeee----------------eebeeebbeebbeeebeeee-------------------e: queryA 939:QALEKTKANIKWVKENKEVVLQWF: 962 :* * ** * * * : 3qnf_B_1 916:QTIETIEENIGWMDKNFDKIRVWL: 939 SecStr :HHHHHHHHHHHHHHHHHHHHHHHH: ExpBur :ebeeebeebbebbeebbeebeebb: |