#WARNING:no index is registered index "YP_009725307.1" in "https://rest.uniprot.org/uniprotkb/" url "https://rest.uniprot.org/uniprotkb/YP_009725307.1.txt".
Please visit the UniProt website(https://www.uniprot.org), and get a proper ID/AC for your query protein. [pdbjlvh2]Protein Model on 7d4f_D_1_A_1

Protein Model on 7d4f_D_1_A_1 (TEMPLATE: 7d4f )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(queryA) D 1 (A) polymer(polypeptide(L)) [898 aa] RNA-directed RNA polymerase :R1AB_SARS2
2 b A 1 (B) polymer(polypeptide(L)) [114 aa] Non-structural protein 8 :R1AB_SARS2 270L 271L 273Y 323P 324T 326F 328P 329L 330V 331R 332K 338V 339P 340F 341V 344T 368F 371L 372L 374Y 378P 379A 380M 381H 382A 383A 384S 386N 387L 388L 389L 390D 391K 392R 396F 398V 400A 402T 403N 405V 407F 447N 509W 514L 515Y 518S 523D 666M (identity: 100.0 %/97.2 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:7d4f_D_1 identity=97.2%
queryA         6:SFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFR: 105
                :*****************        ***************************************************************************:
7d4f_D_1       7:SFLNRVCGVSAARLTPCXXXXXXXXVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFR: 106
SecStr          :  HHHHHHHS S EEE -------- EEEEEEE SS EEEEEEE  S EEEEEE SSS EEEEEEEEEE  HHHHHHHHHHHHHHTTSTTB  EEEEEE :    
ExpBur          :eeeeebeeebebebeee--------eebbebeeeeebbbbbebeeeeeebbbbeeeeeeeeeebbbbeebeeeebeebeebbeebeebebbbebebbebe:    

queryA       106:IDGDMVPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGVL: 205
                :*   ************************************************************************************************:
7d4f_D_1     107:IXXXMVPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGVL: 206
SecStr          : --- EEEEEEEEE SSBHHHHHHHHHS  TTS HHHHHHHHHTTSS GGGGGSTTSS TTT TTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTEEEE :    
ExpBur          :e---eebbbbbbebbbbbbbbbbbbbbbbeeeebebbeebbeebebbeeebbeeeebbbbbebeebbebbeebbeebbebbeebbebbebbeebbbebbb:    

queryA       206:TLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDDR: 305
                :****************************************************************************************************:
7d4f_D_1     207:TLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDDR: 306
SecStr          : GGGBBTTS B   TT EE STT   EE HHHHHHHHHHHHHTTTTSGGGBGGG SSS B    TT    HHHHHHHHHHH TT  S   SSGGG SSHH:    
ExpBur          :bbbbbbbebbbbebeebeeeeeeebebebbbbbbbbbbbbbbbebbebbbbeeeeeeeeeeeeeeeeeebbeebeebbeebbebbebebbbbbeebeebb:    
Contact         :                                                                bb b                                

queryA       306:CILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNV: 405
                :****************************************************************************************************:
7d4f_D_1     307:CILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNV: 406
SecStr          :HHHHHHHHHHHHTTTS GGG EEEEEEEEETTEEEEEEEEEEETTTEEEE S   SEES   HHHHHHHHHSHHHHHHSSEE   SS SS EEEESSSS :    
ExpBur          :bbbbbbbbbbbbbebbeeebbbebeeebebeeeeeebbbbbbbebbbbbebeeeeeeeeeeeebbebbbebbbbebeeeeeebebeebebebebbeeeee:    
Contact         :                 bb b bbbbb     bbbb  b                       b  bb b   bbbbbbb bbbbbbb   b b b bb b

queryA       406:AFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGFP: 505
                :****************************************************************************************************:
7d4f_D_1     407:AFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGFP: 506
SecStr          :    B   EE HHHHHHHHHTT   TTSS     B   B TTHHHHHHGGGGG       HHHHHHHHHHHGGGGTT       GGG   S TTS   TG:    
ExpBur          :eeeebeeeeebeebeebbeeeebbeeeeebeeebebeebeeebbbebbbebebbeebbbbbbbbbbbbbbbbebbeebebbbbebeebeeeeeeeebbbb:    
Contact         : b                                       b                                                          

queryA       506:FNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTV: 605
                :****************************************************************************************************:
7d4f_D_1     507:FNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTV: 606
SecStr          :GGGS  HHHHHHHS HHHHHHHHHHTTTS    EEEEEEE   BSSS  EEEEE  HHHHHHHHHHHHHHHHHHTT  SSSB TT  STTTHHHHHHHHH:    
ExpBur          :beeeeebeebbeebeeeebeebbebbbebbbbbbbbbebeeeeeeeeebebebbbbbbbbbbbbbbbbebbebbeeeeebbbbbebebeebbbeebbeeb:    
Contact         :   b    bb  b    b                                                                                  

queryA       606:YSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVN: 705
                :****************************************************************************************************:
7d4f_D_1     607:YSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVN: 706
SecStr          :SSS SSEEEEE   TTHHHH  HHHHHHHHHHHHTT TTT  HHHHHHHHHHHHHHHTS EEE SSEEEE  S   TT TTHHHHHHHHHHHHHHHHHHH:    
ExpBur          :beebeeeebbbbebbebebbbbbbbbbbbbbbbbbbbeeebeeeeebbbbbbbbbbbbbbbbbbeebbbebebbbbebbebbebbbbbbbbbbbbbbbbb:    
Contact         :                                                            b                                       

queryA       706:ALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDL: 805
                :****************************************************************************************************:
7d4f_D_1     707:ALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDL: 806
SecStr          :HHHTS GGG   HHHHHHHHHHHHHHHT  S  HHHHHHHHHHHHHHEEEEEETTEEEEEEEHHHHHTTSS  HHHHHHHHHHHHS    TTS EEE  S:    
ExpBur          :bbbbbbbeebeeeebeebbbebbebbbeeeeeeeebbeebbebbeebbbbbbeeebbbbbbbbebbeeebbbebebbbbbbbbbbbbbbeeeebbeeeeb:    

queryA       806:TKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYSV: 905
                :******************************************************************************************          :
7d4f_D_1     807:TKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELXXXXXXXXXX: 906
SecStr          :SS  S BTTBEEEEEEETTEEEEEEE  HHHHHHHHHEE HHHHH HHHHHHHHHHHHHHHGGGGGSS HHHHHHHHHHHHHHHHHHHT ----------:    
ExpBur          :eebbeebeebebbebebeeeebbbbbbebbebbbbbbbbeeebeeeeeebbeebbebbbebbbbeeeeeeeebebbebbbebbeebeeee----------:    

queryA       906:MLTNDNTSRYWEPEFYEAMYTPHT: 929
                :     *******************:
7d4f_D_1     907:XXXXXNTSRYWEPEFYEAMYTPHT: 930
SecStr          :-----    TTSHHHHHGGGSS  :    
ExpBur          :-----eeeeeeeeeebeebbeeee:    


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