#WARNING:no index is registered index "YP_009724389.1" in "https://rest.uniprot.org/uniprotkb/" url "https://rest.uniprot.org/uniprotkb/YP_009724389.1.txt".
Please visit the UniProt website(https://www.uniprot.org), and get a proper ID/AC for your query protein. [pdbjlvh2]Protein Model on 7bzf_A_1_F_1

Protein Model on 7bzf_A_1_F_1 (TEMPLATE: 7bzf )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]


MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(queryA) A 1 (A) polymer(polypeptide(L)) [914 aa] RNA-directed RNA polymerase :R1AB_SARS2
2 b F 1 (G) polymer(polyribonucleotide) RNA (5'-R(*UP*GP*UP*UP*CP*GP*AP*CP*GP*AP*CP*AP*CP*A)-3') 5151S 5152D 5205C 5206S 5207Q 5228R 5232A 5237D 5241K 5249E 5250R 5253S 5257D (identity: 100.0 %/98.4 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:7bzf_A_1 identity=98.4%
queryA      4393:SADAQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHD:4492
                :****************************************************************************************************:
7bzf_A_1       1:SADAQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHD: 100
SecStr          : HHHHHHHHHHHTTS S EE  S SS    S   EEEE SS EEEE     S  EEEEEEGGGEEEEEEEEB    HHHHHHHHHHHTTTSSSSS     :    
ExpBur          :eeeeeebbeebbeebeeebbeeeeeebeeeeebbebeeeeebbbbbbbebeebbbbbbeeeeeeeebbbbbbbebeeeebeebeebbeebeebebbbebe:    

queryA      4493:FFKFRIDGDMVPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAG:4592
                :****************************************************************************************************:
7bzf_A_1     101:FFKFRIDGDMVPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAG: 200
SecStr          : EEEBTTSS EEE B  S  SS HHHHHHHHHS  TTT  TTTTTTTTTTSS GGGTTSTTTT SSS TTHHHHHHTTHHHHHHHHHHHHHHHHHHHTTT:    
ExpBur          :bbeeebeeeebebbbbbebbbbbbbbbbbbbbbbeeeebebbeebbeebebbeeebbeeeebbbbbeeeebeebbeebbeebbebbbbbbebbeebeebb:    

queryA      4593:IVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVN:4692
                :****************************************************************************************************:
7bzf_A_1     201:IVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVN: 300
SecStr          :EEEE  GGGB TTS B  TTS EE STT   EE HHHHHHHGGGTTTTTTTSSTTBSSSSSSS B    TT    HHHHHHHHHHH TT SS   SSSTT:    
ExpBur          :bebbbbbbbbbbebbbbebbebeeeeeeebebebbbbbbbbbbbbbbbebbebbbbeeeeeeeeeeeeeeeeeebbeebeebbeebbebbebebbbbbee:    

queryA      4693:CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAA:4792
                :****************************************************************************************************:
7bzf_A_1     301:CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAA: 400
SecStr          : SSHHHHHHHHHHHHHHTSSS TTS EEEEEEEEETTEEEEEEEEEE SSS EE  SS  S BS   HHHHHHHHHSSHHHHSSSEE   SS  S EEEE:    
ExpBur          :beebbbbbbbbbbbbbbbebbbeebbeebeeebebeeeeeebbbbbbbebbbbbebeeeeeebeeeeeeeebbbebbbbebeeeeeebebeebebebbbb:    

queryA      4793:LTNNVAFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDK:4892
                :****************************************************************************************************:
7bzf_A_1     401:LTNNVAFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDK: 500
SecStr          : SSS     B   B   HHHHHHHHTT S TT S     B   B STTHHHHHGGGGG       HHHHHHHHHHHHHHTTT       STT   S TTS:    
ExpBur          :eeeeeeeeebeeebeebebeebbeeeebbeeeeebebebebeeeebebbbebbbebebbbebbbbbbbbbbbbbbbbbbbeebebbbbebeebeeeeeee:    

queryA      4893:SAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN:4992
                :****************************************************************************************************:
7bzf_A_1     501:SAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN: 600
SecStr          :   TTGGGT  HHHHHHHS HHHHHHHHHHHTTS    EEEEEE    BSS    EEEE  HHHHHHHHHHHHHHHHHHHT  SSSB  S  STTTHHHH:    
ExpBur          :ebbbbbeeeeebeebbeebeeebbeebbebbbebbbbbbbbbebeeebeeeeebebebebbbbbbbbbbbbbbebbebbeeeeeebbbbeeeebebbbee:    

queryA      4993:MLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAV:5092
                :****************************************************************************************************:
7bzf_A_1     601:MLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAV: 700
SecStr          :HHHHHTSS SSEEEEE   TTHHHH  HHHHHHHHHHHHTT SSS  HHHHHHHHHHHHHHHTS EEE SSEEEE  SS  TT TTHHHHHHHHHHHHHH:    
ExpBur          :bbeebbeebeeeebbbbebbebebbbbbbbbbbbbbbbbbbbeeebeeeebbbbbbbbbbbbbbbbbbbebbbbbbebbbbeebebbebbbbbbbbbbbb:    

queryA      5093:TANVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCW:5192
                :****************************************************************************************************:
7bzf_A_1     701:TANVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCW: 800
SecStr          :HHHHHHHSSS GGG   SSHHHHHHHHHHHHHS SS  HHHHHHHHHHHHHHEE  EETTEEEEEEEHHHHHHTSS  HHHHHHHHHHHTS    TTS  :    
ExpBur          :bbbbbbbbbbbbeebeeeebeebbbebbebbbeeeeeeeebbeebbebbeebbbbbbeeeebbbbbbbebbeeebbbbbebbbbbbbbbbbbbbeeeebb:    
Contact         :                                                          bb                                        

queryA      5193:TETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML:5292
                :************************************************************************************************    :
7bzf_A_1     801:TETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTXXXX: 900
SecStr          : B  SSS  S BTTBEEEEEESSS EEEEEE  HHHHHHHHH BSSTT  TTSSTHHHHHHHHSSS GGGGSSSHHHHHHHHHHHHHHHHHHHHH ----:    
ExpBur          :ebeeeeebbeebeebbbbebebeeeebbbbbbebbebbbbbbbbeeeeeebeeebbeebbebbeebbbbeeeeeeeebebbebbbebbeebeeeee----:    
Contact         :            bbb                    b   b    b   b       bb  b   b                                   

queryA      5293:DMYSVMLTNDNTSRYWEPEFYEAMYTPHT:5321
                :           ******************:
7bzf_A_1     901:XXXXXXXXXXXTSRYWEPEFYEAMYTPHT: 929
SecStr          :-----------   TTSSTTTTGGGS   :    
ExpBur          :-----------eeeebeeebbeebbeeee:    


Input Residue Numbers for Focused Sites

ex) 2,15,123