#WARNING:no index is registered index "YP_009724389.1" in "https://rest.uniprot.org/uniprotkb/" url "https://rest.uniprot.org/uniprotkb/YP_009724389.1.txt".
Please visit the UniProt website(https://www.uniprot.org), and get a proper ID/AC for your query protein. [pdbjlvh2]Protein Model on 6xqb_A_1_F_1

Protein Model on 6xqb_A_1_F_1 (TEMPLATE: 6xqb )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(queryA) A 1 (A) polymer(polypeptide(L)) [801 aa] RNA-directed RNA polymerase :R1AB_SARS2
2 b F 1 (F) polymer(polyribonucleotide) RNA (5'-R(*GP*UP*GP*GP*GP*CP*CP*CP*A)-3') 4889N 4892K 4893S 4961R 4969K 4981I 4982G 4984S 4986F 4987Y 5074S 5075G 5076D 5077A 5078T 5079T 5081Y 5249E 5307Y (identity: 100.0 %/97.4 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:6xqb_A_1 identity=97.4%
queryA      4423:VYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQ-------------:4509
                :********   *********                                                                                :
6xqb_A_1      32:VYRAFDIYXXXVAGFAKFLK-------------------------------------------------------------------XXXXXXXXXXXXX:  64
SecStr          : EEEEEE ---  EEEEEE --------------------------------------------------------------------------------:    
ExpBur          :eebbbbee---ebbbbeeee--------------------------------------------------------------------------------:    

queryA      4510:------------------------------------------------------RLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWY:4555
                :                                                      **********************************************:
6xqb_A_1      65:XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWY: 164
SecStr          :------------------------------------------------------   SSBHHHHHHHHSS BTTB HHHHHHHHHTTS  GGGGGSTTTT:    
ExpBur          :------------------------------------------------------eebeebbbbbbbbbbbbebeebebbeebbeebebbeeeebeeeebe:    

queryA      4556:DFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPILTLTRALTAESHVDTDLTK:4655
                :**************************************************************    **********************************:
6xqb_A_1     165:DFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTXXXXGVPVVDSYYSLLMPILTLTRALTAESHVDTDLTK: 264
SecStr          : SSS TTHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTEE    STT BTT       S EE ----     THHHHHHSGGGTTTTGGGGGGBGGG TTS:    
ExpBur          :bbbebeebeebbeebbeebbbbbeebbebbbebeeebbebebbbbebbbebebeeeeebeee----eebebbbbbbbbbbbbbbbebbebbebeeeeeee:    

queryA      4656:PYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHS:4755
                :****************************************************************************************************:
6xqb_A_1     265:PYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHS: 364
SecStr          : B    SS    HHHHHHHHHHH TT SS   SSGGG SSHHHHHHHHHHHTGGGSSS TTT EEEEEEEEESSSEEEEEEEEEETTTEEEE SS  SEE:    
ExpBur          :eeeeeeeeeeebeebbeebbbebbebbeeeebbbbeebeebbbbbbbbbbbbbbbebbeeebbbebeeebebeeeeeebbbbbbbebbbbbebeeeeeee:    

queryA      4756:SRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTM:4855
                :****************************************************************************************************:
6xqb_A_1     365:SRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTM: 464
SecStr          :SS  HHHHHHHHS HHHHHTTS     SS SS EEEESSSS            HHHHHHHHTTS S TT S     B     TTHHHHHHGGGGG     :    
ExpBur          :eeeeebbebbbbbbbbeebeeeeebebeebebebebbeeeeeeeeeeeeeeebeebeebbeeeebbeeebebeeebebeeeebebebebbebbebbbebb:    

queryA      4856:CDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSIC:4955
                :****************************************************************************************************:
6xqb_A_1     465:CDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSIC: 564
SecStr          :  HHHHHHHHHHHHHHTTT       GGG      SS   TGGGTT  HHHHHHHS HHHHHHHHHHHTTS    EEEEE     BSSS    EEE  HH:    
ExpBur          :bbbbbbbbbbbbbbbbbeebeebbbeeeebeeeebeeebbbbbeeeeebeebeeebeeeebeebbebbbebbbbbbbbbeeeeebeeeeebebebebbbb:    
Contact         :                                 b  bb                                                              

queryA      4956:STMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVL:5055
                :****************************************************************************************************:
6xqb_A_1     565:STMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVL: 664
SecStr          :HHHHHHHHHTTTTHHHHT TTSSB TT  STTTHHHHHHHHHHSS SSEEEEE   SSHHHH  HHHHHHHHHHTTTT TTT  HHHHHHHHHHHHHHTT:    
ExpBur          :bbbbbbbbbbebbebbbeeeebbbbbebebeebebbebbeebbeebeeeebbbbebeeebbbbbbbbbbbbbbbbbbebeeebeeeebbbbbbbbbbbbb:    
Contact         :     b       b           bb b bb                                                                    

queryA      5056:SEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAV:5155
                :***********************************************    *************************************************:
6xqb_A_1     665:SEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTXXXXIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAV: 764
SecStr          :S EEESSSEEEE      TT TTHHHHHHHHHHHHHHHHHHHHHHH ----  SHHHHHHHHHHHHHHTT     HHHHHHHHHHHHHHEEEEEETTEEE:    
ExpBur          :bbbbbbebbbbebebbbbeebebeebbbbbbbbbbbbbbbbbbbbbe----eeeeebeebbeebbebbbeeeeeeeebbeebbebbeebbbbbbebebbb:    
Contact         :                  bbbbbb b                                                                          

queryA      5156:VCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLA:5255
                :****************************************************************************************************:
6xqb_A_1     765:VCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLA: 864
SecStr          :EEEEHHHHHHTSS  HHHHHHHHHHHTS    TTT EEES TTS  S SSS EEEEEEETTEEEEEEE  HHHHHHHHHS SSSTTT STTHHHHHHHHH:    
ExpBur          :bbbbeebbeebbbbebebbbbbbbbbbbbbbeeeebbeeeebeebbeebeebebbeeebeeeebbbbebebbebbbbbbbbeeeeeeeeeebeebbbebb:    
Contact         :                                                                                             b      

queryA      5256:IDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYSVMLTNDNTSRYWEPE:5311
                :********************************          **************:
6xqb_A_1     865:IDAYPLTKHPNQEYADVFHLYLQYIRKLHDELXXXXXXXXXXMLTNDNTSRYWEPE: 920
SecStr          :HTTGGGGGSS HHHHHHHHHHHHHHHHHHHH ----------  SSHHHHHTTS  :    
ExpBur          :eebbbbeeeeeebebebbebbbebbeebeeee----------eeeeeebebebeee:    
Contact         :                                                   b                                                


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