#WARNING:no index is registered index "YP_009724389.1" in "https://rest.uniprot.org/uniprotkb/" url "https://rest.uniprot.org/uniprotkb/YP_009724389.1.txt".
Please visit the UniProt website(https://www.uniprot.org), and get a proper ID/AC for your query protein. [pdbjlvh2]Protein Model on 5rlg_A_1_C_1

Protein Model on 5rlg_A_1_C_1 (TEMPLATE: 5rlg )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]


MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(queryA) A 1 (B) polymer(polypeptide(L)) [585 aa] Helicase :R1AB_SARS2
2 b C 1 (B) non-polymer(VW1) (2S)-2-(4-cyanophenoxy)propanamide 5794Q 5829A 5830W 5832K 5833A 5867Y (identity: 100.0 %/98.8 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:5rlg_A_1 identity=98.8%
queryA      5326:VGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDVTQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSD:5425
                :****************************************************************************************************:
5rlg_A_1       2:VGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDVTQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSD: 101
SecStr          : EE TTT  EESEEESSSTT  EE HHHHHHHHSSSS   EESSSEES  STT     GGGEEE SSSEEEGGG  SS EESEETTEE  S TTS    S:    
ExpBur          :eeebbebebebbbebbebeeebebbbbbbeebbeebebeebbbeeebebebeeeeeeebeebebbeeebebeeeeeeeeeebbeeeebebeeeeeeebee:    

queryA      5426:NVTDFNAIATCDWTNAGDYILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNYVFTGYRVTKNSKVQIGEYTFE:5525
                :****************************************************************************************************:
5rlg_A_1     102:NVTDFNAIATCDWTNAGDYILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNYVFTGYRVTKNSKVQIGEYTFE: 201
SecStr          :  HHHHHHHH  S BHHHHHHHHHS HHHHHHHHHHHHHHHHHHHHTS  EEEEE  SSSEEEEEE TTS     STTS EEEEEE SSSEEEEEEE EE:    
ExpBur          :ebeebbebbebebbebebbebbbebeeebbbbbbbbbebebbeeeeebbebebeeeeeebebebebeeeeeebebbeebebbbbbeeeeeeeebeebebe:    

queryA      5526:KGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTLVPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYYPS:5625
                :**    **********************************************************************************************:
5rlg_A_1     202:KGXXXXAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTLVPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYYPS: 301
SecStr          :E ---- EEE  SS     TT EEE          S SS    B SS  S    S   TTSGGGHHHHHHHHTBSEEEEE  TTS HHHHHHHHHHHSTT:    
ExpBur          :ee----ebebeeeeeeebeeebebebbeeebeebebebbbeeeeeeeeeebeeeeeeeeebeebeeebeebbebbbbbbbbbbebebebbbbbbbebbee:    

queryA      5626:ARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGD:5725
                :***********************************   **************************************************************:
5rlg_A_1     302:ARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPAXXXVECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGD: 401
SecStr          :  EEEE SSHHHHHHHHHHHHTTS GGGEEE    ---     SSEES TTSSEEE  GGG  SEEEEEEEE  GGG  HHHHHHHHHHEEEEEEEEEE :    
ExpBur          :bbbbbbbeeeebbbebbeebeebbeeeebbbbeee---eebbeebeeeeeebebbbbbbebbbebebebbbbbebbebebbbbbbbbeebebebbbbbbb:    

queryA      5726:PAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGVITHDVSSAINRPQIGVVREFLT:5825
                :****************************************************************************************************:
5rlg_A_1     402:PAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGVITHDVSSAINRPQIGVVREFLT: 501
SecStr          :TTS     TT  BS   GGGS HHHHHHHHT  SEE  EESSS HHHHHHHHHHHSTT  EESS   S EEEEE     EE SS EE HHHHHHHHHHHH:    
ExpBur          :bbbbbbebebeeeeebebebbbbbbeebeeeeeebebeebebbbbbbbebbbebbbeeebeeeeeeeeebbbbeeeeeeeeeeebbbbeebbbbbeebbe:    
Contact         :                                                                    b                               

queryA      5826:RNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGSEYDYVIFTQTTETAHSCNVNRFNVAITRAKVGILCIMSDRDLYDKLQFTSLEIP:5917
                :********************************************************************************************:
5rlg_A_1     502:RNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGSEYDYVIFTQTTETAHSCNVNRFNVAITRAKVGILCIMSDRDLYDKLQFTSLEIP: 593
SecStr          :H GGGGG EEEES HHHHHHHHHHH   EEEHHHHTT  EEEEEEE    SHHHH HHHHHHHHTTEEEEEEEEES HHHHHH  SEE    :    
ExpBur          :eeeebeebbbbbbbbbbbebbeeebebeeeebeebbeeebebbbbbbbbeeeebbeebbbbbbbbbbeebbbbbbbbeebbeebebeeeeee:    
Contact         :   bb bb                                 b                                                          


Input Residue Numbers for Focused Sites

ex) 2,15,123