Protein Model on 6t6r_A_1_D_1 (TEMPLATE: 6t6r )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(AMPN_HUMAN) A 1 (A) polymer(polypeptide(L)) [856 aa] Endoplasmic reticulum aminopeptidase 1 :ERAP1_HUMAN
2 b D 1 (A) non-polymer(MLT) D-MALATE 106S(T) 108T(K) 136R 140R 149D(E) 179D(V) 181E(H) (identity: 28.6 %/36.1 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:6t6r_A_1 identity=36.1%
queryA        71:WNRYRLPNTLKPDSYRVTLRPYLTPNDRGLYVFKGSSTVRFTCKEATDVIIIHSKKLNYTLSQGHRVVLRGVGGSQPPDIDKTELVEPTEYLVVHLKGS-: 169
                :**  ***    *  *       **        * *   *  *    *  ** **  *     *  *  **   *          *  *       *    :
6t6r_A_1      49:WNKIRLPEYVIPVHYDLLIHAQLTT-----LTFWGTTKVEITASQPTSTIILHSHHL-----QISRATLRKGAGERLSEEPLQVLEHPRQEQIALLAPEP: 138
SecStr          :   SS  SSEEEEEEEEEEEEETTT-----TEEEEEEEEEEEESS  SEEEEE SS -----EEEEEEEEES GGG EEEE EEEEETTTTEEEEE SS :    
ExpBur          :beeeebbeebebeebbbbbebebee-----ebbebbbebebebeeebeebbbbbbeb-----ebeebbbeeeeeeeeeebebeebeeeebbbbbbebeee:    
Contact         :                                   b b                           b   b        b                     

queryA       170:LVKDSQYEMDSEFEGELADDLAGFYRSEYM--EGNVRKVVATTQMQAADARKSFPCFDEPAMKAEFNITLIHPKDLTALSNMLPKGPSTPLPEDPNWNVT: 267
                :*     *       * *     *** * *   **  *   * **     **  ******** ** * *         * *** *   *    *       :
6t6r_A_1     139:LLVGLPYTVVIHYAGQLSETFHGFYKSTYRTKEGELR-ILASTQFEPTAARMAFPCFDEPAFKASFSIKIRREPRHLAISNM-PLVKSVTVAEGLIED--: 234
SecStr          :  TT  EEEEEEEEEE BSSSSEEEEEEEE TT  EE-EEEEEE TTTTGGGTS B  STTS BEEEEEEEE TTSEEEESS- EEEEEE STT EEE--:    
ExpBur          :beeeeebebbbebbbebbebbbbbbebebebeeeeee-ebbbbbbbbbbbbbbbbbbbbbebbbbbbbbbebeeebebbbbb-eeeeeeeeeeebbbb--:    
Contact         :         b b                                                                                        

queryA       268:EFHTTPKMSTYLLAFIVSEFDYVEKQASNGVLIRIWARPSAIAAGHGDYALNVTGPILNFFAGHYDTPYPLPKSDQIGLPDFNAGAMENWGLVTYRENSL: 367
                : *  * ****** *** * *  * *    **     * *  *     ****      * *       ****** *    ***  ******** ****  *:
6t6r_A_1     235:HFDVTVKMSTYLVAFIISDFESVSKITKSGVKVSVYAVPDKI--NQADYALDAAVTLLEFYEDYFSIPYPLPKQDLAAIPDFQSGAMENWGLTTYRESAL: 332
SecStr          :EE    SB GGG  EEEE  EEEEEE TT  EEEEEE GGGG--GG HHHHHHHHHHHHHHHHHHT    SSEEEEEEESS SSSEE  TTEEEEEGGGT:    
ExpBur          :ebeebeebbbbbbbbbbbebeeeeeebeeebebbbbbbeebb--ebbebbbebbbebbbbbbebbebebebebbbbbbbbbbbeebbbbbbbbbbbbebb:    

queryA       368:LFDPLSSSSSNKERVVTVIAHELAHQWFGNLVTIEWWNDLWLNEGFASYVEYLGADYAEPTWNLKDLMVLNDVYRVMAVDALASSHPLSTPASEINTPAQ: 467
                :***   ** * *       ************** *************   *        *     *          * **** **** ***      ***:
6t6r_A_1     333:LFDAEKSSASSKLGITMTVAHELAHQWFGNLVTMEWWNDLWLNEGFAKFMEFVSVSVTHPELKVGDYF-FGKCFDAMEVDALQSSHPVSTP---VENPAQ: 428
SecStr          :   TTT  HHHHHHHHHHHHHHHHHHHBTTTEEESSGGGTHHHHHHHHHHHHHHHHHH GGG GGGGT-HHHHHHHHHHHTSTT   SS  ---  SHHH:    
ExpBur          :bbeeeebbbeeebebbbebbbbbbbbbbbbbbbbebbebbbbbbbbbbbbbbbbbeebbeebebeebb-bbebbebbebbbbebbbebbbe---beebee:    

queryA       468:ISELFDAISYSKGASVLRMLSSFLSEDVFKQGLASYLHTFAYQNTIYLNLWDHLQEAVNNRSIQLPTTVRDIMNRWTLQMGFPVITVDTSTGT---LSQE: 564
                :* * **  ** ***  * **   ** * ** *   **    * **    ***                *   ** **** *** **  *  *      **:
6t6r_A_1     429:IREMFDDVSYDKGACILNMLREYLSADAFKSGIVQYLQKHSYKNTKNEDLWDSMA-SIXXXGVD----VKTMMNTWTLQKGFPLITI-TVRGRNVHMKQE: 522
SecStr          :HHHTSSHHHHHHHHHHHHHHHHHH HHHHHHHHHHHHHHTTTEEE HHHHHHHHH-T --- TT----HHHHHHHHHSS S EEEEE-EEETTEEEEEEE:    
ExpBur          :bbbbbbebbebbbbbbbbbbeeebeeeebeebbbebbeebeeebbebeebbebbe-ee---eeb----beebbebbbeeebbbbbbb-beeeeebebebe:    

queryA       565:HFLLDPDSNVTRPSEFNYVWIVPITSIRDGRQQQDYWLIDVRAQNDLFSTSGNEWVLLNLNVTGYYRVNYDEENWRKIQTQLQRDHSAIPVINRAQIIND: 664
                :*                * * ** * *          *        *      **   *    *** * *    *      *   * *     **  ** :
6t6r_A_1     523:HYM----KGXXXXXXXGYLWHVPLTFITSKSDMVHRFLLKTKT-DVLILPEEVEWIKFNVGMNGYYIVHYEDDGWDSLTGLLKGTHTAVSSNDRASLINN: 617
SecStr          :E  ----  -------     EEEEEEETTEEEEEEEEE SSE-EEEE SS  S EEESGGG SS EEEETTTHHHHHHHHHHHHGGGS HHHHHHHHHH:    
ExpBur          :bbe----ee-------eeebbbbbbbbbeeeeeeeeeebeeee-eebebeeeeebbbbbbbbebbbbbbbeeebbeebbebbeeebeebeebbbbbbbbb:    

queryA       665:AFNLASAHKVPVTLALNNTLFLIEERQYMPWEAALSSL-SYFKLM--FDRSEVYGPMKNYLKKQVTPLFIHFRNNTNNWREIPENLMDQYSEVNAISTAC: 761
                :** * *  *     **   * *  *   **    *  *    ***   *  **    *  *      *          *                   **:
6t6r_A_1     618:AFQLVSIGKLSIEKALDLSLYLKHETEIMPVFQGLNELIPMYKLMEKRDMNEVETQFKAFLIRLLRDLI-----DKQTWTD-EGSVSERMLRSQLLLLAC: 711
SecStr          :HHHHHHTTSS HHHHHHHHGGGGG   HHHHHHHHHHHHHHHHHHTTSS HHHHHHHHHHHHHHHHHHH-----HH  SSS- S HHHHHHHHHHHHHHH:    
ExpBur          :bbbbbbeeebebeebbebbebbeebeebbbbebbbebbeebbbbbbbeebeebbeebbebbbebbeebb-----eebebee-eeebeebbbbbebbbbbb:    

queryA       762:SNGVPECEEMVSGLFKQWMENPNNNPIHPNLRSTVYCNAIAQGGEEEWDFAWEQFRNATLVNEADKLRAALACSKELWILNRYLSYTLNPDLIRKQDATS: 861
                :      *     * *  * *   *         *    *      * ***            *      **        *   *      * *  *    :
6t6r_A_1     712:VHNYQPCVQRAEGYFRKWKE--SNGQLSLPVDVTLAVFAVGAQSTEGWDFLYSKYQFSLSSTEKSQIEFALCRTQNKEKLQWLLDESFKGDKIKTQEFPQ: 809
SecStr          :HTT HHHHHHHHHHHHHHHH--TTT S   HHHHHHHHHHHTTSHHHHHHHHHHHTT   HHHHHHHHHHHTT   HHHHHHHHHHHHHTSSS GGGHHH:    
ExpBur          :ebebeebbeebebebeebee--eeeeeebebbbbbbbbbbbbeeeebbebbbeebeebebbbbeebbbebbbbbeeeebbeebbebbeeeeebbbbbbbe:    

queryA       862:TIISITNNVIGQGLVWDFVQSNWKKLFNDYGGGSFSFSNLIQAVTRRFSTEYELQQLEQFKKDNEETGFGSGTRALEQALEKTKANIKWVKENKEVVLQW: 961
                :    *  *  *  * * *   ** **      ** *        *  ***   *     *     *   **  *   *  *    ** *   *      *:
6t6r_A_1     810:ILTLIGRNPVGYPLAWQFLRKNWNKLVQKFELGSSSIAHMVMGTTNQFSTRTRLEEVKGFFSSLKEN--GSQLRCVQQTIETIEENIGWMDKNFDKIRVW: 907
SecStr          :HHHHHHHSTTTHHHHHHHHHHHHHHHHHHH TT HHHHHHHHHHHTT  SHHHHHHHHHHHHHTGGG--TTT HHHHHHHHHHHHHHHHHHHHHHHHHHH:    
ExpBur          :bbbbbbebeebbebbbebbeeebeebbeebebbbebbeebbbbbbebbbeeeebeebeebbeebeee--bbebebbebbbbbbebbbebbeebbeebeeb:    

queryA       962:F: 962
                : :
6t6r_A_1     908:L: 908
SecStr          :H:    
ExpBur          :b:    


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